Rosetta
Variables
test.T110_numeric Namespace Reference

Variables

 extra_options
 
 I = rosetta.numeric.xyzMatrix_double_t.identity()
 
 V = rosetta.numeric.xyzVector_double_t()
 
 a = I * V
 
 m = rosetta.numeric.xyzMatrix_double_t.identity()
 
 xx
 
 xy
 
 xz
 
 yx
 
 yy
 
 yz
 
 zx
 
 zy
 
 zz
 

Variable Documentation

◆ a

test.T110_numeric.a = I * V

◆ extra_options

test.T110_numeric.extra_options

◆ I

test.T110_numeric.I = rosetta.numeric.xyzMatrix_double_t.identity()

Referenced by apps::pilot::SampleSecondaryStructureAlignmentMover.add_gap_constraints_to_pose(), align_backbone_by_chunk(), PickBAB.apply(), IAMover.apply(), apps::pilot::SampleSecondaryStructureAlignmentMover.apply(), ComputeSAXSSpectrum.apply(), RosettaHolesMover.apply(), HBondReporter.apply(), aro_pack_output(), ObjexxFCL::DynamicIndexRange.assign(), ObjexxFCL::StaticIndexRange.assign(), ObjexxFCL::DynamicIndexRange.assign_no_notify(), ObjexxFCL::StaticIndexRange.assign_value_of(), atom_line(), atom_types_test(), backrub_protocol(), balls_pdb(), calculate_total_hASA_within_distance_avgresiduevalues_allnbs_conditionalonnumnbs(), calculate_total_hASA_within_distance_miniSASAvalues_allnbs_exposedornot_conditionalonnumnbs(), ch_o_pdbstats_from_pose(), check_contact_and_output(), check_oxygen_contact_and_output(), compare_dna_energies(), compare_energies(), ObjexxFCL::IndexRange.contain(), ObjexxFCL::DynamicIndexRange.contain(), ObjexxFCL::StaticIndexRange.contain(), ObjexxFCL::DynamicIndexRange.contain_nic(), ObjexxFCL::IndexRange.contains(), ObjexxFCL::DynamicIndexRange.contains(), ChallengeMover.count_alignment(), create_bp_jump_database_test(), MatchSet.cross(), MatchSet.cross_homodimer(), numeric::geometry::hashing::xyzStripeHash.debug_pdb(), design_test(), numeric::kinematic_closure.dixon_eig(), dna_chain_check(), dock(), doit(), dump_efactor_pdb(), MatchAlignInfo.dump_pdb(), Link.dump_pdb(), Bola.dump_pdb(), dump_points_pdb(), dump_points_pdb_contacts(), TCDock.dump_top_hits(), dumpsym(), numeric.expand_xforms(), fa_cenpack_pdbstats_from_pose(), fa_refine_and_design(), figure_out_domain_neighbors(), figure_out_stems(), find_dna_rotamers(), ObjexxFCL.floops(), TCDock.gather_hits(), get_cys_rts(), basic.get_usage_from_procfilesystem(), harvest_motifs(), idealize_tf_pose(), ik_his4(), ChallengeMover.initialize_pose(), ObjexxFCL::IndexRange.intersect(), ObjexxFCL::DynamicIndexRange.intersect(), ObjexxFCL::StaticIndexRange.intersect(), ObjexxFCL::DynamicIndexRange.intersect_nic(), ObjexxFCL::IndexRange.intersects(), ObjexxFCL::DynamicIndexRange.intersects(), intra_dna_stats(), isctfast(), TCDock.justone(), kono_sarai_stats(), ligrot_test(), lk_ball_wtd_deriv_test(), loop_modeling_test(), main(), VallReader.make_fragment_lines(), make_pdb_atom(), mg_hires_pdbstats_from_pose(), mg_pdbstats_from_pose(), mg_pdbstats_test(), modeler_map_test(), ui::task.operator&(), ui::task.operator&=(), operator<<(), ObjexxFCL::DynamicIndexRange.operator=(), ObjexxFCL::IndexRange.operator=(), ObjexxFCL::StaticIndexRange.operator=(), ui::task.operator|(), ui::task.operator|=(), output_benchmark_stuff(), output_centroid_stats(), output_constraints(), output_csts(), SphereSample.pdb_from_level(), polar_pdbstats_test(), predict_chem_map_test(), MPInterfaceStatistics.print_aa_statistics(), print_all_torsions_test(), print_energies(), print_surface_score_by_res(), print_torsions_check(), proline_rama_pdbstats_from_pose(), ChallengeMover.realign(), report(), report_and_dump(), rhiju_pdbstats(), rna_features_from_pose(), rna_protein_pdbstats_test(), rna_stack_pdbstats_from_pose(), rna_suitename(), rotamerize_rna_test(), run(), TCDock.run(), run_3bpy(), run_diiron_glu(), run_m8(), run_zn2his(), sample_rama_test(), sasa_test(), search_other_atoms(), setup_rna_base_pair_constraints(), show_clashes(), show_protein_DNA_interactions(), show_residue_hbonds(), show_residue_residue_clashes(), ConstraintConfig.show_sequence(), sicdock_thread_num(), sicfast(), simple_centroid_test(), single_position_motif_scan(), spec_test(), ObjexxFCL::StaticIndexRange.StaticIndexRange(), apps::pilot::AlignChunkMover.steal_torsion_from_template(), ObjexxFCL::DynamicIndexRange.swap(), ObjexxFCL::IndexRange.swap(), ObjexxFCL::StaticIndexRange.swap(), ObjexxFCL::DynamicIndexRange.swap_no_notify(), test_gb(), test_int(), test_kc(), test_kc2(), test_suck_res(), vary_geometry_backbone(), vary_geometry_sidechains(), and PBPotentialMover.write_APBS_config().

◆ m

test.T110_numeric.m = rosetta.numeric.xyzMatrix_double_t.identity()

◆ V

test.T110_numeric.V = rosetta.numeric.xyzVector_double_t()

◆ xx

test.T110_numeric.xx

◆ xy

test.T110_numeric.xy

◆ xz

test.T110_numeric.xz

◆ yx

test.T110_numeric.yx

◆ yy

test.T110_numeric.yy

◆ yz

test.T110_numeric.yz

◆ zx

test.T110_numeric.zx

◆ zy

test.T110_numeric.zy

◆ zz

test.T110_numeric.zz