PickBAB Class Reference

local mover for testing purposes More...

Inheritance diagram for PickBAB:

Public Types
typedef protocols::jd2::parser::BluePrint	BluePrint
typedef protocols::jd2::parser::BluePrintOP	BluePrintOP
typedef protocols::fldsgn::topology::SS_Info2	SS_Info2
typedef protocols::fldsgn::topology::SS_Info2_OP	SS_Info2_OP
typedef protocols::fldsgn::topology::StrandCOP	StrandCOP
typedef protocols::fldsgn::topology::HelixCOP	HelixCOP
typedef protocols::fldsgn::topology::StrandPairingSet	StrandPairingSet
typedef protocols::fldsgn::topology::StrandPairingSetOP	StrandPairingSetOP
typedef protocols::fldsgn::topology::SheetSet	SheetSet
typedef protocols::fldsgn::topology::SheetSetOP	SheetSetOP
typedef protocols::fldsgn::topology::BetaAlphaBetaMotif	BetaAlphaBetaMotif
typedef protocols::fldsgn::topology::BetaAlphaBetaMotifs	BetaAlphaBetaMotifs
typedef protocols::fldsgn::topology::BetaAlphaBetaMotifSet	BetaAlphaBetaMotifSet

Public Member Functions
	PickBAB ()
virtual	~PickBAB ()
virtual std::string	get_name () const
virtual protocols::moves::MoverOP	fresh_instance () const
virtual void	apply (core::pose::Pose &pose)

Private Attributes
protocols::fldsgn::topology::SS_Info2_OP	ssinfo_
std::ofstream	output_
std::ofstream	output2_
core::scoring::ScoreFunctionOP	scorefxn_centroid_
core::scoring::ScoreFunctionOP	scorefxn_fullatom_
core::util::ABEGOManager	am_
bool	ssinput_
Size	num_bab_
Size	nstruct_

Detailed Description

local mover for testing purposes

Member Typedef Documentation

BetaAlphaBetaMotif

typedef protocols::fldsgn::topology::BetaAlphaBetaMotif PickBAB::BetaAlphaBetaMotif

BetaAlphaBetaMotifs

typedef protocols::fldsgn::topology::BetaAlphaBetaMotifs PickBAB::BetaAlphaBetaMotifs

BetaAlphaBetaMotifSet

typedef protocols::fldsgn::topology::BetaAlphaBetaMotifSet PickBAB::BetaAlphaBetaMotifSet

BluePrint

typedef protocols::jd2::parser::BluePrint PickBAB::BluePrint

BluePrintOP

typedef protocols::jd2::parser::BluePrintOP PickBAB::BluePrintOP

HelixCOP

typedef protocols::fldsgn::topology::HelixCOP PickBAB::HelixCOP

SheetSet

typedef protocols::fldsgn::topology::SheetSet PickBAB::SheetSet

SheetSetOP

typedef protocols::fldsgn::topology::SheetSetOP PickBAB::SheetSetOP

SS_Info2

typedef protocols::fldsgn::topology::SS_Info2 PickBAB::SS_Info2

SS_Info2_OP

typedef protocols::fldsgn::topology::SS_Info2_OP PickBAB::SS_Info2_OP

StrandCOP

typedef protocols::fldsgn::topology::StrandCOP PickBAB::StrandCOP

StrandPairingSet

typedef protocols::fldsgn::topology::StrandPairingSet PickBAB::StrandPairingSet

StrandPairingSetOP

typedef protocols::fldsgn::topology::StrandPairingSetOP PickBAB::StrandPairingSetOP

Constructor & Destructor Documentation

PickBAB()

PickBAB::PickBAB ( )

inline

References blue, basic::options::OptionKeys::flxbb::blueprint, lactamize::filename, option, erraser_single_res_analysis::out, bin_torsions::output, and basic::options::OptionKeys::inout::dbms::user.

~PickBAB()

virtual PickBAB::~PickBAB ( )

inlinevirtual

Member Function Documentation

apply()

virtual void PickBAB::apply ( core::pose::Pose &  pose )

inlinevirtual

References spectral_cluster_kmeans_adaptive_kernel_density_bb_dependent_rotlib::A, basic::options::OptionKeys::in::file::dssp, ObjexxFCL::format::F(), create_a3b_hbs::i, test.T110_numeric::I, create_a3b_hbs::ii, basic::options::OptionKeys::ms::checkpoint::interval, basic::options::OptionKeys::out::level, ObjexxFCL::format::LJ(), option, localrmsd::output_name, beta_nonlocal::pose, basic::options::OptionKeys::motifs::r1, basic::options::OptionKeys::motifs::r2, basic::options::OptionKeys::remodel::rama, and basic::options::OptionKeys::inout::dbms::user.

Referenced by pyrosetta.distributed.tasks.rosetta_scripts.BaseRosettaScriptsTask::execute().

fresh_instance()

virtual protocols::moves::MoverOP PickBAB::fresh_instance ( ) const

inlinevirtual

get_name()

virtual std::string PickBAB::get_name ( ) const

inlinevirtual

Member Data Documentation

am_

core::util::ABEGOManager PickBAB::am_

private

nstruct_

Size PickBAB::nstruct_

private

num_bab_

Size PickBAB::num_bab_

private

output2_

std::ofstream PickBAB::output2_

private

output_

std::ofstream PickBAB::output_

private

scorefxn_centroid_

core::scoring::ScoreFunctionOP PickBAB::scorefxn_centroid_

private

scorefxn_fullatom_

core::scoring::ScoreFunctionOP PickBAB::scorefxn_fullatom_

private

ssinfo_

protocols::fldsgn::topology::SS_Info2_OP PickBAB::ssinfo_

private

ssinput_

bool PickBAB::ssinput_

private

---

The documentation for this class was generated from the following file:

• src/apps/pilot/nobuyasu/pick_bab.cc