analyze_base_pairing.cc File Reference

Analyze base pairing patterns in a silent file. More...

#include <core/types.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/io/silent/BinarySilentStruct.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/io/silent/SilentFileOptions.hh>
#include <core/pose/rna/util.hh>
#include <basic/options/option.hh>
#include <protocols/viewer/viewers.hh>
#include <core/pose/Pose.hh>
#include <core/pose/full_model_info/FullModelInfo.fwd.hh>
#include <core/pose/extra_pose_info_util.hh>
#include <devel/init.hh>
#include <core/import_pose/import_pose.hh>
#include <core/import_pose/pose_stream/PoseInputStream.hh>
#include <core/import_pose/pose_stream/PoseInputStream.fwd.hh>
#include <core/import_pose/pose_stream/PDBPoseInputStream.hh>
#include <core/import_pose/pose_stream/SilentFilePoseInputStream.hh>
#include <iostream>
#include <string>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/full_model.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <utility/excn/Exceptions.hh>
#include <protocols/stepwise/modeler/working_parameters/StepWiseWorkingParameters.fwd.hh>
#include <protocols/stepwise/sampler/rna/RNA_KinematicCloser.fwd.hh>
#include <core/scoring/rna/data/RNA_DMS_Potential.fwd.hh>

Functions
void	analyze_base_pair_test ()
void *	my_main (void *)
int	main (int argc, char *argv[])

Detailed Description

Analyze base pairing patterns in a silent file.

Function Documentation

analyze_base_pair_test()

void analyze_base_pair_test

(

)

References basic::options::OptionKeys::chemical::chemical, data, gaussian-sampling::input, in::file::native(), docking::native_pose, option, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, basic::options::OptionKeys::full_model::rna::rna, docking::s, in::file::s(), basic::options::OptionKeys::frags::scoring::scoring, basic::options::OptionKeys::in::file::silent, in::file::silent(), out::file::silent(), tag, tag_from_pose(), in::file::tags(), basic::options::OptionKeys::inout::dbms::user, and value.

Referenced by my_main().

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, utility::io::oc::cout, full_model::cutpoint_open(), test.T009_Exceptions::e, in::file::fasta(), basic::init(), in::file::input_res(), my_main(), option, in::file::s(), in::file::silent(), in::file::tags(), viewer_main(), and score::weights().

my_main()

void* my_main

(

void *

)

References analyze_base_pair_test(), and utility::options::OptionKeys::options::exit.

Referenced by main().