loophash_cenrelax.cc File Reference

#include <protocols/jd2/JobDistributor.hh>
#include <boost/unordered_map.hpp>
#include <core/fragment/picking/VallChunk.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/fragment/picking/VallProvider.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/pose/util.hh>
#include <core/kinematics/Jump.hh>
#include <core/kinematics/RT.hh>
#include <basic/options/option.hh>
#include <core/import_pose/pose_stream/util.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <core/pose/Pose.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/scoring/constraints/util.hh>
#include <core/scoring/constraints/CoordinateConstraint.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoreFunction.hh>
#include <basic/Tracer.hh>
#include <core/scoring/rms_util.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/io/silent/SilentStruct.hh>
#include <core/io/silent/BinarySilentStruct.hh>
#include <core/io/silent/ProteinSilentStruct.hh>
#include <core/io/silent/SilentStructFactory.hh>
#include <devel/init.hh>
#include <numeric/HomogeneousTransform.hh>
#include <protocols/loops/Loop.hh>
#include <protocols/wum/SilentStructStore.hh>
#include <protocols/relax/FastRelax.hh>
#include <protocols/loops/Loops.hh>
#include <protocols/match/Hit.fwd.hh>
#include <protocols/match/Hit.hh>
#include <numeric/geometry/hashing/SixDHasher.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/topology_broker/TopologyBroker.hh>
#include <protocols/topology_broker/util.hh>
#include <utility/excn/Exceptions.hh>
#include <utility/exit.hh>
#include <utility/fixedsizearray1.hh>
#include <utility/pointer/owning_ptr.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/optimization/AtomTreeMinimizer.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <protocols/loophash/LoopHashLibrary.fwd.hh>
#include <protocols/loophash/LoopHashLibrary.hh>
#include <protocols/loophash/LoopHashMap.hh>
#include <protocols/loophash/LoopHashSampler.hh>
#include <protocols/loophash/LocalInserter.hh>
#include <protocols/loophash/BackboneDB.hh>
#include <iostream>
#include <string>
#include <cstdio>
#include <basic/options/keys/broker.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/lh.OptionKeys.gen.hh>
#include <basic/options/keys/relax.OptionKeys.gen.hh>
#include <core/import_pose/import_pose.hh>
#include <basic/datacache/CacheableData.hh>
#include <core/util/SwitchResidueTypeSet.hh>

Classes
class	LoopHashRelax_Sampler

Typedefs
typedef utility::pointer::owning_ptr< LoopHashRelax_Sampler >	LoopHashRelax_SamplerOP
typedef utility::pointer::owning_ptr< LoopHashRelax_Sampler const >	LoopHashRelax_SamplerCOP

Functions
void	run_sandbox (LoopHashLibraryOP)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("main")

Typedef Documentation

LoopHashRelax_SamplerCOP

typedef utility::pointer::owning_ptr< LoopHashRelax_Sampler const > LoopHashRelax_SamplerCOP

LoopHashRelax_SamplerOP

typedef utility::pointer::owning_ptr< LoopHashRelax_Sampler > LoopHashRelax_SamplerOP

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, utility::io::oc::cout, lh::create_db(), test.T009_Exceptions::e, basic::init(), enumerate_junctions::int, loop_hash_library, lh::loopsizes(), option, run_sandbox(), lh::sandbox(), options_will::short, and TR.

run_sandbox()

void run_sandbox

(

LoopHashLibraryOP

)

References utility::io::oc::cout, pyrosetta.distributed.io::pose_from_file, and challenge::ss.

Referenced by main().

Variable Documentation

TR

basic::Tracer TR("main") ( "main"  )

static

Referenced by main().