numeric::geometry::hashing Namespace Reference

Classes
class	MinimalClashHash
struct	bin_index_hasher
	Small hashing struct with no private data; simply an algorithm to turn a 64-bit representation of a 6d voxel into an integer. More...
class	SixDOffsetTree
	Returns a list of offsets corresponding to the bins in a hypershell with radius x. More...
class	SixDCoordinateBinner
	Bin the six degrees of freedom that describe the downstream geometry of a hit. These degrees of freedom are, in order, the x, y and z coordinates of orientation atom3, and the phi, psi, and theta euler angles that describe the orientation of the coordinate frame at orientation atom 3. The binner is responsible for maintaining the lower corner of the 6-d space – the first two Euler angles wrap at 360; the third Euler angle, theta, does not wrap in the same way. See the comments for the bin6 method. More...
struct	Ball
struct	Counter
class	xyzStripeHash
class	xyzStripeHashWithMeta
class	xyzStripeHashWithMeta_float

Typedefs
typedef utility::pointer::shared_ptr< MinimalClashHash >	MinimalClashHashOP
typedef utility::pointer::shared_ptr< MinimalClashHash const >	MinimalClashHashCOP
typedef utility::pointer::weak_ptr< MinimalClashHash const >	MinimalClashHashCAP
typedef utility::fixedsizearray1< numeric::Size, 3 >	Size3
typedef utility::fixedsizearray1< numeric::Size, 4 >	Size4
typedef utility::fixedsizearray1< numeric::Real, 6 >	Real6
typedef utility::fixedsizearray1< numeric::Size, 6 >	Size6
typedef utility::fixedsizearray1< numeric::Size, 3 >	Bin3D
typedef utility::fixedsizearray1< numeric::Real, 3 >	Real3
typedef utility::fixedsizearray1< numeric::Size, 6 >	Bin6D
typedef utility::fixedsizearray1< platform::SSize, 6 >	SBin6D
typedef Bin3D	xyzbin
typedef Bin3D	eulerbin
typedef Bin3D	center_of_mass_binned
typedef Bin3D	euler_angles_binned
typedef Bin3D_equals	euler_equals
typedef Bin3D_hash	euler_hash
typedef Bin3D_equals	xyzbin_hash
typedef Bin3D_hash	xyzbin_equals
typedef utility::pointer::shared_ptr< SixDCoordinateBinner >	SixDCoordinateBinnerOP
typedef utility::pointer::shared_ptr< SixDCoordinateBinner const >	SixDCoordinateBinnerCOP
typedef utility::pointer::shared_ptr< xyzStripeHash >	xyzStripeHashOP
typedef utility::pointer::shared_ptr< xyzStripeHash const >	xyzStripeHashCOP
typedef utility::pointer::weak_ptr< xyzStripeHash const >	xyzStripeHashCAP
typedef utility::pointer::shared_ptr< xyzStripeHashWithMeta< numeric::Real > >	xyzStripeHashWithMetaRealOP
typedef utility::pointer::shared_ptr< xyzStripeHashWithMeta< numeric::Real > const >	xyzStripeHashWithMetaRealCOP
typedef utility::pointer::shared_ptr< xyzStripeHashWithMeta< float > >	xyzStripeHashWithMetaFloatOP
typedef utility::pointer::shared_ptr< xyzStripeHashWithMeta< float > const >	xyzStripeHashWithMetaFloatCOP

Functions
std::ostream &	operator<< (std::ostream &os, Ball const &ball)
	Test IO operator for debug and Python bindings. More...

Typedef Documentation

Bin3D

typedef utility::fixedsizearray1< numeric::Size, 3 > numeric::geometry::hashing::Bin3D

Bin6D

typedef utility::fixedsizearray1< numeric::Size, 6 > numeric::geometry::hashing::Bin6D

center_of_mass_binned

typedef Bin3D numeric::geometry::hashing::center_of_mass_binned

euler_angles_binned

typedef Bin3D numeric::geometry::hashing::euler_angles_binned

euler_equals

typedef Bin3D_equals numeric::geometry::hashing::euler_equals

euler_hash

typedef Bin3D_hash numeric::geometry::hashing::euler_hash

eulerbin

typedef Bin3D numeric::geometry::hashing::eulerbin

MinimalClashHashCAP

typedef utility::pointer::weak_ptr< MinimalClashHash const > numeric::geometry::hashing::MinimalClashHashCAP

MinimalClashHashCOP

typedef utility::pointer::shared_ptr< MinimalClashHash const > numeric::geometry::hashing::MinimalClashHashCOP

MinimalClashHashOP

typedef utility::pointer::shared_ptr< MinimalClashHash > numeric::geometry::hashing::MinimalClashHashOP

Real3

typedef utility::fixedsizearray1< numeric::Real, 3 > numeric::geometry::hashing::Real3

Real6

typedef utility::fixedsizearray1< numeric::Real, 6 > numeric::geometry::hashing::Real6

SBin6D

typedef utility::fixedsizearray1< platform::SSize, 6 > numeric::geometry::hashing::SBin6D

SixDCoordinateBinnerCOP

typedef utility::pointer::shared_ptr< SixDCoordinateBinner const > numeric::geometry::hashing::SixDCoordinateBinnerCOP

SixDCoordinateBinnerOP

typedef utility::pointer::shared_ptr< SixDCoordinateBinner > numeric::geometry::hashing::SixDCoordinateBinnerOP

Size3

typedef utility::fixedsizearray1< numeric::Size, 3 > numeric::geometry::hashing::Size3

Size4

typedef utility::fixedsizearray1< numeric::Size, 4 > numeric::geometry::hashing::Size4

Size6

typedef utility::fixedsizearray1< numeric::Size, 6 > numeric::geometry::hashing::Size6

xyzbin

typedef Bin3D numeric::geometry::hashing::xyzbin

xyzbin_equals

typedef Bin3D_hash numeric::geometry::hashing::xyzbin_equals

xyzbin_hash

typedef Bin3D_equals numeric::geometry::hashing::xyzbin_hash

xyzStripeHashCAP

typedef utility::pointer::weak_ptr< xyzStripeHash const > numeric::geometry::hashing::xyzStripeHashCAP

xyzStripeHashCOP

typedef utility::pointer::shared_ptr< xyzStripeHash const > numeric::geometry::hashing::xyzStripeHashCOP

xyzStripeHashOP

typedef utility::pointer::shared_ptr< xyzStripeHash > numeric::geometry::hashing::xyzStripeHashOP

xyzStripeHashWithMetaFloatCOP

typedef utility::pointer::shared_ptr< xyzStripeHashWithMeta<float> const > numeric::geometry::hashing::xyzStripeHashWithMetaFloatCOP

xyzStripeHashWithMetaFloatOP

typedef utility::pointer::shared_ptr< xyzStripeHashWithMeta<float> > numeric::geometry::hashing::xyzStripeHashWithMetaFloatOP

xyzStripeHashWithMetaRealCOP

typedef utility::pointer::shared_ptr< xyzStripeHashWithMeta<numeric::Real> const > numeric::geometry::hashing::xyzStripeHashWithMetaRealCOP

xyzStripeHashWithMetaRealOP

typedef utility::pointer::shared_ptr< xyzStripeHashWithMeta<numeric::Real> > numeric::geometry::hashing::xyzStripeHashWithMetaRealOP

Function Documentation

operator<<()

std::ostream & numeric::geometry::hashing::operator<<	(	std::ostream &	os,
		Ball const &	ball
	)

Test IO operator for debug and Python bindings.

References numeric::geometry::hashing::Ball::atomno_, numeric::geometry::hashing::Ball::radius_, numeric::geometry::hashing::Ball::resid_, numeric::geometry::hashing::Ball::x_, numeric::geometry::hashing::Ball::y_, and numeric::geometry::hashing::Ball::z_.