test.Workshop5test Namespace Reference

Variables
	extra_options
	start = pose_from_file("../test/data/workshops/1YY8.clean.pdb")
	test = Pose()
	pmm = PyMOLMover()
float	kT = 1.0
int	n_moves = 1
	movemap = MoveMap()
	small_mover = SmallMover(movemap, kT, n_moves)
	shear_mover = ShearMover(movemap, kT, n_moves)
	test2 = Pose()
	min_mover = MinMover()
	mm4060 = MoveMap()
	scorefxn = create_score_function("ref2015")
	mc = MonteCarlo(test, scorefxn, kT)
	trial_mover = TrialMover(small_mover, mc)
	seq_mover = protocols.moves.SequenceMover()
	trialmover = TrialMover(seq_mover, mc)
	repeat_mover = RepeatMover(trialmover, 2)
	relax = protocols.relax.ClassicRelax()

Variable Documentation

extra_options

test.Workshop5test.extra_options

kT

float test.Workshop5test.kT = 1.0

mc

test.Workshop5test.mc = MonteCarlo(test, scorefxn, kT)

min_mover

test.Workshop5test.min_mover = MinMover()

mm4060

test.Workshop5test.mm4060 = MoveMap()

movemap

test.Workshop5test.movemap = MoveMap()

n_moves

int test.Workshop5test.n_moves = 1

pmm

test.Workshop5test.pmm = PyMOLMover()

relax

test.Workshop5test.relax = protocols.relax.ClassicRelax()

repeat_mover

test.Workshop5test.repeat_mover = RepeatMover(trialmover, 2)

Referenced by main().

scorefxn

test.Workshop5test.scorefxn = create_score_function("ref2015")

seq_mover

test.Workshop5test.seq_mover = protocols.moves.SequenceMover()

Referenced by SymFixbbMover.apply(), graphics_main(), LoopBuild_main(), main(), protocols::antibody::design::AntibodyDesignMoverGenerator.setup_dock_low_res(), and SymDock_main_local().

shear_mover

test.Workshop5test.shear_mover = ShearMover(movemap, kT, n_moves)

Referenced by HECTMover.apply(), UBQ_E2Mover.apply(), PepMinMover.apply(), UBQ_GTPase_disulfide_Mover.apply(), main(), run_mc(), RunPepSpec(), and shear_moves_test().

small_mover

test.Workshop5test.small_mover = SmallMover(movemap, kT, n_moves)

Referenced by HECTMover.apply(), UBQ_E2Mover.apply(), PepMinMover.apply(), UBQ_GTPase_disulfide_Mover.apply(), capri15_relax(), main(), run_mc(), small_min_test(), small_moves_test(), and test().

start

test.Workshop5test.start = pose_from_file("../test/data/workshops/1YY8.clean.pdb")

test

test.Workshop5test.test = Pose()

Referenced by doit(), numeric::geometry::hashing::SixDOffsetTree.init(), and main().

test2

test.Workshop5test.test2 = Pose()

trial_mover

test.Workshop5test.trial_mover = TrialMover(small_mover, mc)

Referenced by PepMinMover.apply(), and main().

trialmover

test.Workshop5test.trialmover = TrialMover(seq_mover, mc)