#include <core/types.hh>
#include <core/chemical/ResidueTypeSet.fwd.hh>
#include <protocols/abinitio/AbrelaxApplication.hh>
#include <protocols/abinitio/ClassicAbinitio.hh>
#include <protocols/checkpoint/CheckPointer.hh>
#include <protocols/loops/Loops.hh>
#include <protocols/Protocol.hh>
#include <protocols/evaluation/PoseEvaluator.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunction.fwd.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/scoring/func/Func.hh>
#include <core/pose/Pose.hh>
#include <core/pose/Pose.fwd.hh>
#include <devel/init.hh>
#include <basic/options/util.hh>
#include <basic/options/option.hh>
#include <basic/Tracer.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <core/io/silent/silent.fwd.hh>
#include <core/io/silent/SilentFileData.fwd.hh>
#include <utility/vector1.hh>
#include <utility/io/ozstream.hh>
#include <apps/pilot/bcorreia/fold_from_loops.hh>
#include <devel/fold_from_loops/FoldFromLoopsMover.hh>
#include <devel/fold_from_loops/FoldFromLoops_functions.hh>
#include <vector>
#include <fstream>
#include <iostream>
#include <string>
#include <basic/options/keys/loops.OptionKeys.gen.hh>
#include <basic/options/keys/fold_from_loops.OptionKeys.gen.hh>
#include <core/chemical/VariantType.hh>
#include <core/import_pose/import_pose.hh>
#include <core/kinematics/Jump.hh>
#include <core/pose/util.hh>

Functions
bool	is_loop_neighbor (protocols::loops::Loops &loops, Size &residue, Size &range)

void	fold_tree_generator (protocols::loops::Loops &loops, std::vector< Size > &cutpoints, core::pose::Pose &pose, kinematics::FoldTree &f)

int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("bcorreia_fold_from_loops")

Function Documentation

◆ fold_tree_generator()

void fold_tree_generator	(	protocols::loops::Loops &	loops,
		std::vector< Size > &	cutpoints,
		core::pose::Pose &	pose,
		kinematics::FoldTree &	f
	)

References loops::cutpoint, create_a3b_hbs::f, create_a3b_hbs::i, beta_nonlocal::pose, and TR.

◆ is_loop_neighbor()

bool is_loop_neighbor	(	protocols::loops::Loops &	loops,
		Size &	residue,
		Size &	range
	)

References create_a3b_hbs::i, range, residue, and basic::options::OptionKeys::cutoutdomain::start.

Referenced by CA_cst_generator(), and define_movemap_extending_chain().

◆ main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, CA_cst_generator(), test.T009_Exceptions::e, basic::options::OptionKeys::in::file::extended_pose, create_a3b_hbs::f, lactamize::filename, get_fragments(), basic::init(), kic_runner::loop_file, basic::options::OptionKeys::fold_from_loops::native_ca_cst, option, pyrosetta.distributed.io::pose_from_file, register_options(), basic::options::OptionKeys::frags::scoring::scoring, basic::options::start_file(), basic::options::OptionKeys::fold_from_loops::swap_loops, test.Workshop5test::trial_mover, and basic::options::OptionKeys::inout::dbms::user.

Variable Documentation

◆ TR

basic::Tracer TR("bcorreia_fold_from_loops") ( "bcorreia_fold_from_loops" )

static

Referenced by fold_tree_generator().