rotamer_recovery.cc File Reference

#include <protocols/jd2/JobDistributor.hh>
#include <protocols/rotamer_recovery/RotamerRecoveryMover.hh>
#include <protocols/rotamer_recovery/RotamerRecovery.fwd.hh>
#include <protocols/rotamer_recovery/RotamerRecoveryFactory.hh>
#include <devel/init.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/packing.OptionKeys.gen.hh>
#include <basic/options/option_macros.hh>
#include <basic/Tracer.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/scoring/ScoreFunction.fwd.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <utility/excn/Exceptions.hh>
#include <utility/exit.hh>
#include <fstream>

Functions
void	register_options ()
	Set up the options for this pilot app. More...
int	main (int argc, char *argv[])

Variables
static Tracer	TR ("apps.benchmark.scientific.rotamer_recovery")

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, test.T009_Exceptions::e, val2thr::fout, utility::options::OptionCollection::has(), basic::init(), basic::options::option, erraser_single_res_analysis::out, basic::options::OptionKeys::docking::ligand::protocol, register_options(), globals::reporter, basic::options::OptionKeys::packing::resfile, sequence_recovery::rotamer_recovery, basic::options::TR, basic::options::OptionKeys::inout::dbms::user, utility_exit, and value.

register_options()

void register_options

(

)

Set up the options for this pilot app.

References basic::options::OptionKeys::in::file::l, basic::options::OptionKeys::in::file::native, NEW_OPT, OPT, basic::options::OptionKeys::docking::ligand::protocol, globals::reporter, basic::options::OptionKeys::packing::resfile, sequence_recovery::rotamer_recovery, basic::options::OptionKeys::in::file::s, basic::options::OptionKeys::in::file::silent, and basic::options::OptionKeys::packing::use_input_sc.

Referenced by main(), my_main(), OPT_KEY(), protocols::abinitio::JumpSpecificAbrelax::register_options(), NativeEnsemble::register_options(), GlycomutagenesisProtocol::register_options(), DockGlycansProtocol::register_options(), register_options_broker(), and setup_for_folding().

Variable Documentation

TR

Tracer TR("apps.benchmark.scientific.rotamer_recovery") ( "apps.benchmark.scientific.rotamer_recovery"  )

static