legacy_score_vs_rmsd Namespace Reference

Variables
	parser = argparse.ArgumentParser()
	arguments = parser.parse_args()
	pattern = os.path.join(arguments.cluster, '*/output.txt')
	outputs = glob.glob(pattern)
list	scores = []
list	rmsds = []
	rmsd = float(line.split()[2])
	score = float(line.split()[2])

Variable Documentation

arguments

legacy_score_vs_rmsd.arguments = parser.parse_args()

outputs

legacy_score_vs_rmsd.outputs = glob.glob(pattern)

parser

legacy_score_vs_rmsd.parser = argparse.ArgumentParser()

pattern

legacy_score_vs_rmsd.pattern = os.path.join(arguments.cluster, '*/output.txt')

Referenced by invariants_for_cyclic_permutation(), main(), and set_pattern().

rmsd

legacy_score_vs_rmsd.rmsd = float(line.split()[2])

rmsds

list legacy_score_vs_rmsd.rmsds = []

Referenced by compute_windowed_rmsd(), main(), output_results(), and show().

score

legacy_score_vs_rmsd.score = float(line.split()[2])

scores

list legacy_score_vs_rmsd.scores = []

Referenced by add_scores(), SpartaSuperDeviationMover.apply(), calc_blosum_scores(), calc_rmsf_and_avrg(), myspace.check_clash(), dump_energy_kinemage(), energy_cluster(), extract_scores(), get_close_and_lowE(), get_min_index(), ligand_dock_main_jd1(), main(), min_index(), output_torsion_list(), SpartaSuperDeviationMover.print_stats(), read_silent_input_as_library(), rna_protein_rb_test(), save_per_residue_scores(), scan_Evalue(), myspace.scan_Evalue(), apps::pilot::momeara::HBondConformation.score_conformations(), and superimpose_smotifs().