SpartaSuperDeviationMover Class Reference

Inheritance diagram for SpartaSuperDeviationMover:

Public Member Functions
	SpartaSuperDeviationMover (core::pose::Pose const &native_pose, std::string const &cs_file)
virtual std::string	get_name () const
bool	dump_pdbs () const
void	dump_pdbs (bool setting)
void	apply (core::pose::Pose &pose)
void	print_stats ()

Private Attributes
bool	dump_pdbs_
core::pose::Pose const &	native_pose_
utility::vector1< std::string >	pose_tags_
utility::vector1< utility::vector1< core::Real > >	deviations_
utility::vector1< utility::vector1< core::Real > >	sparta_scores_
protocols::sparta::Sparta	sparta_

Constructor & Destructor Documentation

SpartaSuperDeviationMover()

SpartaSuperDeviationMover::SpartaSuperDeviationMover ( core::pose::Pose const &  native_pose, std::string const &  cs_file  )

inline

Referenced by main().

Member Function Documentation

apply()

void SpartaSuperDeviationMover::apply ( core::pose::Pose &  pose )

inline

References ObjexxFCL::internal::ObserverMediator::accumulate(), utility::io::ozstream::close(), utility::io::oc::cout, deviations_, build_jacobian::distance, dump_pdbs(), utility::options::OptionKeys::options::exit, create_a3b_hbs::ii, beta_nonlocal::jj, native_pose_, natoms(), beta_nonlocal::pose, pose_tags_, runtime_assert, create_a3b_hbs::score, legacy_score_vs_rmsd::scores, sparta_, sparta_scores_, tag, and tag_from_pose().

Referenced by pyrosetta.distributed.tasks.rosetta_scripts.BaseRosettaScriptsTask::execute().

dump_pdbs() [1/2]

bool SpartaSuperDeviationMover::dump_pdbs ( ) const

inline

References dump_pdbs_.

Referenced by apply(), and print_stats().

dump_pdbs() [2/2]

void SpartaSuperDeviationMover::dump_pdbs ( bool  setting )

inline

References dump_pdbs_.

get_name()

virtual std::string SpartaSuperDeviationMover::get_name ( ) const

inlinevirtual

print_stats()

void SpartaSuperDeviationMover::print_stats ( )

inline

References ObjexxFCL::internal::ObserverMediator::accumulate(), calc_median(), calc_min(), utility::io::ozstream::close(), run::debug(), deviations_, dump_pdbs(), ObjexxFCL::format::F(), create_a3b_hbs::ii, beta_nonlocal::jj, native_pose_, natoms(), basic::options::OptionKeys::mp::mutate_relax::nmodels, create_a3b_hbs::nres, utility::io::ozstream::open(), option, pose_tags_, create_a3b_hbs::score, legacy_score_vs_rmsd::scores, sparta_, sparta_scores_, ObjexxFCL::string_of(), tag, and tag_from_pose().

Member Data Documentation

deviations_

utility::vector1< utility::vector1< core::Real > > SpartaSuperDeviationMover::deviations_

private

Referenced by apply(), and print_stats().

dump_pdbs_

bool SpartaSuperDeviationMover::dump_pdbs_

private

Referenced by dump_pdbs().

native_pose_

core::pose::Pose const& SpartaSuperDeviationMover::native_pose_

private

Referenced by apply(), and print_stats().

pose_tags_

utility::vector1< std::string > SpartaSuperDeviationMover::pose_tags_

private

Referenced by apply(), and print_stats().

sparta_

protocols::sparta::Sparta SpartaSuperDeviationMover::sparta_

private

Referenced by apply(), and print_stats().

sparta_scores_

utility::vector1< utility::vector1< core::Real > > SpartaSuperDeviationMover::sparta_scores_

private

Referenced by apply(), and print_stats().

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The documentation for this class was generated from the following file:

• src/apps/pilot/james/sparta_superdev.cc