sparta_superdev.cc File Reference

#include <core/types.hh>
#include <devel/init.hh>
#include <core/conformation/Residue.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <core/scoring/rms_util.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/moves/Mover.fwd.hh>
#include <protocols/jobdist/not_universal_main.hh>
#include <protocols/sparta/Sparta.hh>
#include <utility/vector1.hh>
#include <numeric/xyzVector.hh>
#include <core/id/AtomID_Map.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/run.OptionKeys.gen.hh>
#include <basic/options/keys/evaluation.OptionKeys.gen.hh>
#include <core/import_pose/import_pose.hh>
#include <utility/io/ozstream.hh>
#include <ObjexxFCL/string.functions.hh>
#include <ObjexxFCL/format.hh>
#include <fstream>
#include <algorithm>
#include <numeric>
#include <utility/excn/Exceptions.hh>

Classes
class	SpartaSuperDeviationMover

Typedefs
typedef utility::pointer::owning_ptr< SpartaSuperDeviationMover >	SpartaSuperDeviationMoverOP

Functions
core::Real	calc_min (utility::vector1< core::Real > const &n)
core::Real	calc_median (utility::vector1< core::Real > const &n)
int	main (int argc, char *argv[])

Detailed Description

Author

James Thompson

Typedef Documentation

SpartaSuperDeviationMoverOP

typedef utility::pointer::owning_ptr< SpartaSuperDeviationMover > SpartaSuperDeviationMoverOP

Function Documentation

calc_median()

core::Real calc_median

(

utility::vector1< core::Real > const &

n

)

References count, and kmeans_adaptive_kernel_density_bb_dependent_rotlib::n.

Referenced by SpartaSuperDeviationMover::print_stats().

calc_min()

core::Real calc_min

(

utility::vector1< core::Real > const &

n

)

References min(), and kmeans_adaptive_kernel_density_bb_dependent_rotlib::n.

Referenced by SpartaSuperDeviationMover::print_stats().

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, basic::options::OptionKeys::chemical::chemical, evaluation::chemical_shifts(), test.T009_Exceptions::e, basic::init(), in::file::native(), docking::native_pose, option, pyrosetta.distributed.io::pose_from_file, SpartaSuperDeviationMover::SpartaSuperDeviationMover(), usage(), basic::options::OptionKeys::inout::dbms::user, and utility_exit_with_message.