james Directory Reference

Directory dependency graph for james:

Files
file	add_ligand.cc
file	analyze_casp9.cc
file	angle_recovery_stats.cc
file	angles.cc
file	anneal_align.cc
file	assemble_domains_jd2.cc
file	basic_thread.cc
file	boost_hacks.cc
file	build_template.cc
file	burial.cc
file	ca_build.cc
file	cartesian.cc
file	casp9_superdev.cc
file	compare_features.cc
file	constraints_matrix.cc
file	constraints_viewer.cc
file	copy_hack.cc
file	cs_align.cc
file	cst_func.cc
file	cst_quality.cc
file	density_grid.cc
file	design_profile.cc
file	distances.cc
file	dp_align.cc
file	exhaustive_align.cc
file	fast_cm.cc
file	filter_sequences.cc
file	homolog_cst.hh
file	hybrid.cc
file	james_util.hh
file	jcluster.cc
file	jdock.cc
file	jidealize.cc
file	jrelax.cc
file	jscore.cc
file	jseq.cc
file	kdtree_disulf.cc
file	make_artificial_centroids.cc
	takes an input set of PDBs, creates artificial centroid by averaging coordinates
file	make_profile.cc
file	mammoth_hack.cc
file	medal_test.cc
file	min_cst.cc
file	model_quality.cc
file	per_residue_features.cc
file	phi_hack.cc
file	pick_frags.cc
file	prof_search.cc
file	remap_aln.cc
file	sc_interaction.cc
file	score_silent_cst.cc
file	seqdb_stats.cc
file	silent_cst_quality.cc
file	simple_cm.cc
file	sparta_superdev.cc
file	super.cc
file	superdev.cc
file	thread_fast.cc