fast_cm.cc File Reference

#include <devel/init.hh>
#include <protocols/relax/MiniRelax.hh>
#include <protocols/loops/Loops.hh>
#include <protocols/loops/ccd_closure.hh>
#include <protocols/comparative_modeling/util.hh>
#include <protocols/comparative_modeling/ThreadingMover.hh>
#include <protocols/idealize/IdealizeMover.hh>
#include <core/id/AtomID.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/chemical/util.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/ResidueTypeSet.fwd.hh>
#include <core/sequence/util.hh>
#include <core/id/SequenceMapping.hh>
#include <core/sequence/SequenceAlignment.hh>
#include <core/pose/Pose.hh>
#include <core/io/silent/SilentStruct.fwd.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/io/silent/SilentStructFactory.hh>
#include <core/import_pose/pose_stream/util.hh>
#include <core/import_pose/pose_stream/MetaPoseInputStream.hh>
#include <core/scoring/ScoreType.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/constraints/CoordinateConstraint.hh>
#include <core/scoring/func/HarmonicFunc.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/ResidueFactory.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/cm.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <string>
#include <map>
#include <utility/excn/Exceptions.hh>

Classes
class	FastThreadingMover

Functions
void	ccd_close_loop (core::pose::Pose &pose, protocols::loops::Loop &loop)
	quick demo program for cm_main More...
int	main (int argc, char *argv[])

Function Documentation

ccd_close_loop()

void ccd_close_loop	(	core::pose::Pose &	pose,
		protocols::loops::Loop &	loop
	)

quick demo program for cm_main

Author

James Thompson

References create_a3b_hbs::ii, internal_coordinates::loop, basic::options::OptionKeys::loops::ccd::max_rama_score_increase, beta_nonlocal::mm, and beta_nonlocal::pose.

main()

int main	(	int	argc,
		char *	argv[]
	)

References in::file::alignment(), cm::aln_format(), FastThreadingMover::apply(), argv, utility::io::oc::cerr, basic::options::OptionKeys::chemical::chemical, utility::io::oc::cout, test.T009_Exceptions::e, end, basic::init(), gaussian-sampling::input, subloop_histogram::iterator, option, beta_nonlocal::pose, basic::options::OptionKeys::mp::assembly::poses, poses_from_cmd_line(), basic::options::OptionKeys::relax::sequence, sfd, basic::options::OptionKeys::in::file::silent, out::file::silent(), and in::file::template_pdb().