build_template.cc File Reference

#include <core/types.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/optimization/AtomTreeMinimizer.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <core/pose/Pose.hh>
#include <basic/options/option.hh>
#include <basic/options/after_opts.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/sequence/sequtil.hh>
#include <basic/basic.hh>
#include <basic/Tracer.hh>
#include <devel/init.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <core/io/silent/SilentStruct.hh>
#include <core/io/silent/ProteinSilentStruct.hh>
#include <utility/vector1.hh>
#include <utility/file/file_sys_util.hh>
#include <utility/file/FileName.hh>
#include <protocols/viewer/viewers.hh>
#include <ObjexxFCL/format.hh>
#include <ObjexxFCL/string.functions.hh>
#include <fstream>
#include <iostream>
#include <string>
#include "homolog_cst.hh"
#include <basic/options/keys/constraints.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pose/annotated_sequence.hh>
#include <utility/excn/Exceptions.hh>

Functions
void *	build_template (void *)
int	main (int argc, char *argv[])

Detailed Description

Author

James Thompson

Function Documentation

build_template()

void* build_template

(

void *

)

References create_starting_template(), basic::options::OptionKeys::cluster::energy_based_clustering::cst_file, basic::options::OptionKeys::constraints::cst_weight, in::file::fasta(), beta_nonlocal::mm, in::file::native(), docking::native_pose, option, pyrosetta.distributed.io::pose_from_file, oop_conformations::scorefxn, basic::options::OptionKeys::frags::scoring::scoring, basic::options::OptionKeys::relax::sequence, basic::options::OptionKeys::inout::dbms::user, and basic::options::OptionKeys::remodel::vdw.

Referenced by main().

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, build_template(), test.T009_Exceptions::e, basic::init(), and viewer_main().