read_l_print_pdbinfo.cc File Reference

#include <algorithm>
#include <cctype>
#include <limits>
#include <unordered_map>
#include <devel/init.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/moves/Mover.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/id/AtomID.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/Conformation.hh>
#include <core/chemical/ResidueType.hh>
#include <core/chemical/AtomType.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <basic/options/option.hh>
#include <basic/Tracer.hh>
#include <utility/file/FileName.hh>
#include <utility/vector1.hh>
#include <core/import_pose/import_pose.hh>
#include <core/scoring/hbonds/hbonds.hh>
#include <core/scoring/hbonds/HBondDatabase.hh>
#include <core/scoring/hbonds/HBondSet.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/TenANeighborGraph.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <core/id/AtomID_Map.hh>
#include <core/conformation/PointGraph.hh>
#include <core/conformation/find_neighbors.hh>
#include <devel/buns/BuriedUnsatHbondFilter2.hh>
#include <devel/vardist_solaccess/VarSolDRotamerDots.hh>
#include <core/types.hh>
#include <utility/options/keys/FileVectorOptionKey.hh>
#include <utility/io/ozstream.hh>
#include <utility/io/izstream.hh>
#include <core/pose/util.hh>

Classes
class	xtal_water_bunsat

Typedefs
typedef utility::pointer::owning_ptr< xtal_water_bunsat >	xtal_water_bunsatOP

Functions
static void	read_FileVector (const basic::options::FileVectorOptionKey &fv_key, std::vector< std::string > &str_vec)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("apps.pilot.kevin.buns")
basic::options::FileVectorOptionKey const	nat_list_opkey ("nat_list")
basic::options::FileVectorOptionKey const	rlx_list_opkey ("rlx_list")

Typedef Documentation

xtal_water_bunsatOP

typedef utility::pointer::owning_ptr< xtal_water_bunsat > xtal_water_bunsatOP

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References utility::options::OptionCollection::add(), xtal_water_bunsat::apply(), argv, utility::io::oc::cout, test.T009_Exceptions::e, create_a3b_hbs::i, basic::init(), nat_list_opkey, basic::options::option, option, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file(), read_FileVector(), rlx_list_opkey, in::file::s(), and TR.

read_FileVector()

static void read_FileVector ( const basic::options::FileVectorOptionKey &  fv_key, std::vector< std::string > &  str_vec  )

static

References getline(), basic::options::OptionKeys::in::file::l, line, basic::options::OptionKeys::in::file::list, basic::options::option, and basic::options::OptionKeys::inout::dbms::user.

Referenced by main().

Variable Documentation

nat_list_opkey

basic::options::FileVectorOptionKey const nat_list_opkey("nat_list")

(

"nat_list"

)

Referenced by main().

rlx_list_opkey

basic::options::FileVectorOptionKey const rlx_list_opkey("rlx_list")

(

"rlx_list"

)

Referenced by main().

TR

basic::Tracer TR("apps.pilot.kevin.buns") ( "apps.pilot.kevin.buns"  )

static

Referenced by main().