rna_thread_and_minimize.cc File Reference

#include <protocols/rna/movers/RNAThreadAndMinimizeMover.hh>
#include <core/types.hh>
#include <core/pose/rna/util.hh>
#include <core/chemical/ResidueTypeSet.fwd.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/import_pose/import_pose.hh>
#include <core/sequence/Sequence.hh>
#include <protocols/viewer/viewers.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <core/pose/Pose.hh>
#include <devel/init.hh>
#include <utility/vector1.hh>
#include <ObjexxFCL/FArray1D.hh>
#include <iostream>
#include <string>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/option_macros.hh>
#include <utility/excn/Exceptions.hh>

Typedefs
using	Matrix = numeric::xyzMatrix< Real >

Functions
std::string	remove_dashes (std::string const &s)
Size	figure_out_which_sequence_is_template (utility::vector1< sequence::SequenceOP > const &sequences_from_alignment, pose::Pose const &template_pose, std::string const &template_file_name)
void *	my_main (void *)
int	main (int argc, char *argv[])

Typedef Documentation

Matrix

using Matrix = numeric::xyzMatrix<Real>

Function Documentation

figure_out_which_sequence_is_template()

Size figure_out_which_sequence_is_template	(	utility::vector1< sequence::SequenceOP > const &	sequences_from_alignment,
		pose::Pose const &	template_pose,
		std::string const &	template_file_name
	)

References utility::io::oc::cout, kmeans_adaptive_kernel_density_bb_dependent_rotlib::n, remove_dashes(), runtime_assert, and utility_exit_with_message.

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, test.T009_Exceptions::e, basic::init(), my_main(), NEW_OPT, beta_sc_scan::seq, and viewer_main().

my_main()

void* my_main

(

void *

)

References utility::io::oc::cout, utility::options::OptionKeys::options::exit, in::file::fasta(), option, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, runtime_assert, in::file::s(), basic::options::OptionKeys::frags::scoring::scoring, beta_sc_scan::seq, basic::options::OptionKeys::relax::sequence, subloop_histogram::size, basic::options::OptionKeys::inout::dbms::user, utility_exit_with_message, and value.

Referenced by main().

remove_dashes()

std::string remove_dashes ( std::string const &  s )

inline

References create_a3b_hbs::i, and docking::s.

Referenced by figure_out_which_sequence_is_template().