membrane_ddG.cc File Reference

Membrane Framework Application: ddG of Mutation in Membranes. More...

#include <devel/init.hh>
#include <protocols/membrane/ddG/MembraneDDGMover.hh>
#include <protocols/membrane/ddG/Mutation.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/jd2/util.hh>
#include <protocols/jd2/internal_util.hh>
#include <core/chemical/AA.hh>
#include <core/pose/Pose.hh>
#include <core/types.hh>
#include <utility/excn/Exceptions.hh>
#include <basic/Tracer.hh>
#include <iostream>

Functions
utility::vector1< MutationOP >	ompLA_task ()
	ompLA Task More...
utility::vector1< MutationOP >	ompA_task ()
	Lukas Tamm - Aromatic residues at the interface regions task. More...
utility::vector1< MutationOP >	bacteriorhodpsin_task ()
	Bowie - Bacteriorhodopsin B Helix Mutations. More...
int	main (int argc, char *argv[])
	Main method. More...

Variables
static basic::Tracer	TR ("apps.pilot.ralford.membrane_ddG")

Detailed Description

Membrane Framework Application: ddG of Mutation in Membranes.

The membrane framework currently supports computing ddG of mutations: Uses membrane representation, energ functions, and current tools for Rosetta design for computing ddGs. Last Modified: 7/26/14

Author

Rebecca Alford (rfalf.nosp@m.ord1.nosp@m.2@gma.nosp@m.il.c.nosp@m.om)

Function Documentation

bacteriorhodpsin_task()

utility::vector1< MutationOP > bacteriorhodpsin_task

(

)

Bowie - Bacteriorhodopsin B Helix Mutations.

Remarks

PDBID = 1PY6

Referenced by main().

main()

int main	(	int	argc,
		char *	argv[]
	)

Main method.

References argv, bacteriorhodpsin_task(), test.T009_Exceptions::e, basic::init(), ompA_task(), ompLA_task(), register_options(), and basic::options::OptionKeys::frags::scoring::scoring.

ompA_task()

utility::vector1< MutationOP > ompA_task

(

)

Lukas Tamm - Aromatic residues at the interface regions task.

Remarks

protein name = ompA

Referenced by main().

ompLA_task()

utility::vector1< MutationOP > ompLA_task

(

)

ompLA Task

Referenced by main().

Variable Documentation

TR

basic::Tracer TR("apps.pilot.ralford.membrane_ddG") ( "apps.pilot.ralford.membrane_ddG"  )

static