dna::design Namespace Reference

Namespaces
	reversion
	specificity

Functions
BooleanOptionKey const	design ("dna:design")
BooleanOptionKey const	output_unbound_pdb ("dna:design:output_unbound_pdb")
RealOptionKey const	z_cutoff ("dna:design:z_cutoff")
StringOptionKey const	protein_scan ("dna:design:protein_scan")
StringOptionKey const	checkpoint ("dna:design:checkpoint")
BooleanOptionKey const	minimize ("dna:design:minimize")
StringVectorOptionKey const	dna_defs ("dna:design:dna_defs")
StringOptionKey const	dna_defs_file ("dna:design:dna_defs_file")
BooleanOptionKey const	nopdb ("dna:design:nopdb")
BooleanOptionKey const	designable_second_shell ("dna:design:designable_second_shell")
BooleanOptionKey const	base_contacts_only ("dna:design:base_contacts_only")
IntegerOptionKey const	probe_specificity ("dna:design:probe_specificity")
BooleanOptionKey const	reversion_scan ("dna:design:reversion_scan")
BooleanOptionKey const	binding ("dna:design:binding")
RealOptionKey const	Boltz_temp ("dna:design:Boltz_temp")
BooleanOptionKey const	repack_only ("dna:design:repack_only")
BooleanOptionKey const	sparse_pdb_output ("dna:design:sparse_pdb_output")

Function Documentation

base_contacts_only()

BooleanOptionKey const dna::design::base_contacts_only

(

"dna:design:base_contacts_only"

)

References design().

binding()

BooleanOptionKey const dna::design::binding

(

"dna:design:binding"

)

References design().

Boltz_temp()

RealOptionKey const dna::design::Boltz_temp

(

"dna:design:Boltz_temp"

)

References design().

checkpoint()

StringOptionKey const dna::design::checkpoint

(

"dna:design:checkpoint"

)

References design().

design()

BooleanOptionKey const dna::design::design

(

"dna:design"

)

Referenced by base_contacts_only(), binding(), Boltz_temp(), checkpoint(), designable_second_shell(), dna_defs(), dna_defs_file(), dna::design::reversion::dscore_cutoff(), dna::design::reversion::dspec_cutoff(), dna::design::specificity::include_dna_potentials(), minimize(), nopdb(), dna::design::specificity::output_structures(), output_unbound_pdb(), probe_specificity(), protein_scan(), repack_only(), dna::design::reversion::reversion(), reversion_scan(), sparse_pdb_output(), dna::design::specificity::specificity(), and z_cutoff().

designable_second_shell()

BooleanOptionKey const dna::design::designable_second_shell

(

"dna:design:designable_second_shell"

)

References design().

dna_defs()

StringVectorOptionKey const dna::design::dna_defs

(

"dna:design:dna_defs"

)

References design().

dna_defs_file()

StringOptionKey const dna::design::dna_defs_file

(

"dna:design:dna_defs_file"

)

References design().

minimize()

BooleanOptionKey const dna::design::minimize

(

"dna:design:minimize"

)

References design().

nopdb()

BooleanOptionKey const dna::design::nopdb

(

"dna:design:nopdb"

)

References design().

output_unbound_pdb()

BooleanOptionKey const dna::design::output_unbound_pdb

(

"dna:design:output_unbound_pdb"

)

References design().

probe_specificity()

IntegerOptionKey const dna::design::probe_specificity

(

"dna:design:probe_specificity"

)

References design().

protein_scan()

StringOptionKey const dna::design::protein_scan

(

"dna:design:protein_scan"

)

References design().

repack_only()

BooleanOptionKey const dna::design::repack_only

(

"dna:design:repack_only"

)

References design().

reversion_scan()

BooleanOptionKey const dna::design::reversion_scan

(

"dna:design:reversion_scan"

)

References design().

sparse_pdb_output()

BooleanOptionKey const dna::design::sparse_pdb_output

(

"dna:design:sparse_pdb_output"

)

References design().

z_cutoff()

RealOptionKey const dna::design::z_cutoff

(

"dna:design:z_cutoff"

)

References design().