dna::design::specificity Namespace Reference

Functions
BooleanOptionKey const	specificity ("dna:design:specificity")
BooleanOptionKey const	output_structures ("dna:design:specificity:output_structures")
BooleanOptionKey const	include_dna_potentials ("dna:design:specificity:include_dna_potentials")

Function Documentation

include_dna_potentials()

BooleanOptionKey const dna::design::specificity::include_dna_potentials

(

"dna:design:specificity:include_dna_potentials"

)

References dna::design::design(), and specificity().

output_structures()

BooleanOptionKey const dna::design::specificity::output_structures

(

"dna:design:specificity:output_structures"

)

References dna::design::design(), and specificity().

specificity()

BooleanOptionKey const dna::design::specificity::specificity

(

"dna:design:specificity"

)

References dna::design::design().

Referenced by dna::specificity::design_DNA(), dna::specificity::dna_backbone_torsion_sdevs(), dna::specificity::dna_chi_torsion_sdev(), dna::specificity::dna_sugar_torsion_sdev(), dna::specificity::dump_pdbs(), dna::specificity::exclude_dna_dna(), dna::specificity::fast(), dna::specificity::frag_files(), include_dna_potentials(), dna::specificity::lk_ball_bridge_angle_widthscale(), dna::specificity::lk_ball_for_bb(), dna::specificity::lk_ball_overlap_gap(), dna::specificity::lk_ball_overlap_width_A2(), dna::specificity::lk_ball_ramp_width_A2(), dna::specificity::lk_ball_water_fade(), dna::specificity::lk_ball_waters_donor(), dna::specificity::lk_ball_waters_ring(), dna::specificity::lk_ball_waters_sp2(), dna::specificity::lk_ball_waters_sp3(), dna::specificity::lk_ball_wtd_prefactors(), dna::specificity::lk_ball_wtd_tag(), dna::specificity::lk_dome_ball_overlap_width_A2(), dna::specificity::lk_dome_h2o_radius(), dna::specificity::lk_dome_max_angle(), dna::specificity::lk_dome_min_angle(), dna::specificity::lk_dome_occlusion_max(), dna::specificity::lk_dome_occlusion_min(), dna::specificity::lk_dome_overlap_width_A2(), dna::specificity::lk_dome_ramp_width_A2(), dna::specificity::lk_dome_water_adjust(), dna::specificity::lk_dome_water_dist(), dna::specificity::methylate(), dna::specificity::min_type(), dna::specificity::minimize_tolerance(), dna::specificity::mode(), dna::specificity::motif_begin(), dna::specificity::motif_size(), dna::specificity::moving_jump(), dna::specificity::n_inner(), dna::specificity::n_outer(), dna::specificity::nloop(), dna::specificity::nstep_water(), dna::specificity::only_repack(), output_structures(), dna::specificity::params(), dna::specificity::pdb_pos(), dna::specificity::post_minimize(), dna::specificity::pre_minimize(), dna::specificity::pre_pack(), dna::specificity::randomize_motif(), dna::specificity::score_function(), dna::specificity::soft_rep(), dna::specificity::specificity(), dna::specificity::Wdna_bp(), dna::specificity::Wdna_bs(), dna::specificity::weights_tag(), dna::specificity::weights_tag_list(), and dna::specificity::Wfa_elec().