DomainAssemblerNDocker.cc File Reference

#include <protocols/abinitio/AbrelaxApplication.hh>
#include <protocols/abinitio/ClassicAbinitio.hh>
#include <protocols/relax/ClassicRelax.hh>
#include <core/io/silent/SilentStruct.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/io/silent/SilentStructFactory.hh>
#include <devel/init.hh>
#include <core/types.hh>
#include <core/sequence/util.hh>
#include <core/sequence/Sequence.hh>
#include <core/pose/Pose.hh>
#include <basic/Tracer.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/fragment/FragmentIO.hh>
#include <core/conformation/Residue.hh>
#include <core/scoring/rms_util.hh>
#include <core/io/silent/silent.fwd.hh>
#include <core/io/silent/ProteinSilentStruct.hh>
#include <core/fragment/FragSet.hh>
#include <utility/exit.hh>
#include <utility/io/izstream.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/abinitio.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/assembly.OptionKeys.gen.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/scoring/constraints/Constraint.hh>
#include <string>
#include <core/import_pose/import_pose.hh>
#include <core/pose/annotated_sequence.hh>

Classes
class	DomainAssemblerNDocker

Functions
void	register_options ()
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("protocols::DommainAssemblerNDocker")

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, test.T009_Exceptions::e, basic::init(), bin_torsions::job, and register_options().

register_options()

void register_options

(

)

References score::saxs::custom_ff(), in::file::fasta(), in::file::native(), NEW_OPT, out::nooutput(), out::nstruct(), OPT, score::saxs::q_max(), score::saxs::q_min(), score::saxs::q_step(), score::saxs::ref_spectrum(), and in::file::residue_type_set().

Referenced by main().

Variable Documentation

TR

basic::Tracer TR("protocols::DommainAssemblerNDocker") ( "protocols::DommainAssemblerNDocker"  )

static

Author

Mike Tyka

Dominik Gront

Referenced by DomainAssemblerNDocker::setup_cen_domains().