app for motif-biased protein-DNA design More...

#include <devel/init.hh>
#include <protocols/motifs/motif_utils.hh>
#include <protocols/motifs/MotifDnaPacker.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pose/Pose.hh>
#include <core/scoring/dna/setup.hh>
#include <core/scoring/ScoreFunction.fwd.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <basic/Tracer.hh>
#include <string>
#include <basic/options/option.hh>
#include <basic/options/util.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/dna.OptionKeys.gen.hh>
#include <utility/vector1.hh>
#include <utility/string_util.hh>

Functions
void	motif_dna_packer_design ()

int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("apps.pilot.motif_dna_packer_design")

Detailed Description

app for motif-biased protein-DNA design

Author: sthyme

Function Documentation

◆ main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, test.T009_Exceptions::e, basic::init(), and motif_dna_packer_design().

◆ motif_dna_packer_design()

void motif_dna_packer_design ( )

References utility::io::oc::cout, pyrosetta.distributed.io::get_score_function(), basic::options::OptionKeys::dna::design::minimize, basic::options::option, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file(), basic::options::OptionKeys::out::prefix, oop_conformations::scorefxn, basic::options::start_files(), utility::string_split(), TR, and basic::options::OptionKeys::inout::dbms::user.

Referenced by main().

Variable Documentation

◆ TR

basic::Tracer TR("apps.pilot.motif_dna_packer_design") ( "apps.pilot.motif_dna_packer_design" )

static

Referenced by motif_dna_packer_design().