test.C001_Carbohydrates_Demo01 Namespace Reference

Variables
	pm = PyMOLMover()
	glucose = pose_from_saccharide_sequence('alpha-D-Glcp')
	galactose = pose_from_saccharide_sequence('Galp')
	mannose = pose_from_saccharide_sequence('->3)-a-D-Manp')
	maltotriose = pose_from_saccharide_sequence('a-D-Glcp-' * 3)
	isomaltose = pose_from_saccharide_sequence('->6)-Glcp-' * 2)
	lactose = pose_from_saccharide_sequence('b-D-Galp-(1->4)-a-D-Glcp')
	Glc1 = glucose.residue(1)
	ring_set = Glc1.type().ring_conformer_set(1)
	conformer = ring_set.get_ideal_conformer_by_name('1C4')
	LacNAc = pose_from_saccharide_sequence('b-D-Galp-(1->4)-a-D-GlcpNAc')
	Lex = pose_from_saccharide_sequence('b-D-Galp-(1->4)-[a-L-Fucp-(1->3)]-D-GlcpNAc')
	N_linked = pose_from_file('../test/data/carbohydrates/N-linked_14-mer_glycan.pdb')
	O_linked = pose_from_file('../test/data/carbohydrates/O_glycan.pdb')
	peptide = pose_from_sequence('ASA')

Variable Documentation

conformer

test.C001_Carbohydrates_Demo01.conformer = ring_set.get_ideal_conformer_by_name('1C4')

galactose

test.C001_Carbohydrates_Demo01.galactose = pose_from_saccharide_sequence('Galp')

Glc1

test.C001_Carbohydrates_Demo01.Glc1 = glucose.residue(1)

glucose

test.C001_Carbohydrates_Demo01.glucose = pose_from_saccharide_sequence('alpha-D-Glcp')

isomaltose

test.C001_Carbohydrates_Demo01.isomaltose = pose_from_saccharide_sequence('->6)-Glcp-' * 2)

Referenced by main().

LacNAc

test.C001_Carbohydrates_Demo01.LacNAc = pose_from_saccharide_sequence('b-D-Galp-(1->4)-a-D-GlcpNAc')

lactose

test.C001_Carbohydrates_Demo01.lactose = pose_from_saccharide_sequence('b-D-Galp-(1->4)-a-D-Glcp')

Referenced by main().

Lex

test.C001_Carbohydrates_Demo01.Lex = pose_from_saccharide_sequence('b-D-Galp-(1->4)-[a-L-Fucp-(1->3)]-D-GlcpNAc')

Referenced by main().

maltotriose

test.C001_Carbohydrates_Demo01.maltotriose = pose_from_saccharide_sequence('a-D-Glcp-' * 3)

Referenced by main().

mannose

test.C001_Carbohydrates_Demo01.mannose = pose_from_saccharide_sequence('->3)-a-D-Manp')

N_linked

test.C001_Carbohydrates_Demo01.N_linked = pose_from_file('../test/data/carbohydrates/N-linked_14-mer_glycan.pdb')

O_linked

test.C001_Carbohydrates_Demo01.O_linked = pose_from_file('../test/data/carbohydrates/O_glycan.pdb')

Referenced by main().

peptide

test.C001_Carbohydrates_Demo01.peptide = pose_from_sequence('ASA')

Referenced by CovalentPeptidomimeticCreator.apply().

pm

test.C001_Carbohydrates_Demo01.pm = PyMOLMover()

Referenced by main().

ring_set

test.C001_Carbohydrates_Demo01.ring_set = Glc1.type().ring_conformer_set(1)