test_carbohydrate_scoring.cc File Reference

Application source code for testing carbohydrate scoring methods. More...

#include <devel/init.hh>
#include <core/types.hh>
#include <core/chemical/carbohydrates/CarbohydrateInfo.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/carbohydrates/GlycanTreeSet.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/pose/Pose.hh>
#include <core/pose/annotated_sequence.hh>
#include <core/pose/carbohydrates/util.hh>
#include <core/import_pose/import_pose.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <protocols/minimization_packing/MinMover.hh>
#include <utility/excn/Exceptions.hh>
#include <iostream>

Functions
int const	SUCCESS (0)
int const	FAILURE (-1)
string const	PATH ("input/")
Real	output_score (Pose &sugar, core::uint res_num, ScoreFunction const &sf, bool silently=false)
void	sample_torsions (Pose &pose, core::uint res_num, ScoreFunction const &sf)
int	main (int argc, char *argv[])

Detailed Description

Application source code for testing carbohydrate scoring methods.

Author

Labonte JWLab.nosp@m.onte.nosp@m.@jhu..nosp@m.edu

Function Documentation

FAILURE()

int const FAILURE

(

-

1

)

Referenced by main().

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, utility::io::oc::cout, test.T009_Exceptions::e, FAILURE(), basic::init(), test.C001_Carbohydrates_Demo01::isomaltose, test.C001_Carbohydrates_Demo01::lactose, beta_nonlocal::mm, output_score(), PATH(), pyrosetta.distributed.io::pose_from_file, sample_torsions(), and SUCCESS().

output_score()

Real output_score	(	Pose &	sugar,
		core::uint	res_num,
		ScoreFunction const &	sf,
		bool	silently = false
	)

References utility::io::oc::cout, cal_NBR_radius::res_num, and basic::options::OptionKeys::out::sf.

Referenced by main(), and sample_torsions().

PATH()

string const PATH

(

"input/"

)

Referenced by main().

sample_torsions()

void sample_torsions	(	Pose &	pose,
		core::uint	res_num,
		ScoreFunction const &	sf
	)

References create_a3b_hbs::best_score, utility::io::oc::cout, info(), basic::options::OptionKeys::AnchoredDesign::filters::omega, output_score(), oop_conformations::phi, beta_nonlocal::pose, oop_conformations::psi, cal_NBR_radius::res_num, and basic::options::OptionKeys::out::sf.

Referenced by main().

SUCCESS()

int const SUCCESS

(

0

)

Referenced by main().