Variables
	extra_options

float	kT = 1.0

int	n_moves = 10

	pose = core.import_pose.pose_from_file("../test/data/test_fragments.pdb")

	pose_frag = core.import_pose.pose_from_file("../test/data/test_fragments.pdb")

	movemap = MoveMap()

	fragset3mer = core.fragment.ConstantLengthFragSet(3, "../test/data/test3_fragments")

	fragset9mer = core.fragment.ConstantLengthFragSet(9, "../test/data/test9_fragments")

	mover_3mer = protocols.simple_moves.ClassicFragmentMover(fragset3mer, movemap)

	scorefxn = get_score_function()

	smallmover = protocols.simple_moves.SmallMover(movemap,kT,n_moves)

	shearmover = protocols.simple_moves.ShearMover(movemap, kT, n_moves)

	minmover = protocols.minimization_packing.MinMover()

	mc = MonteCarlo(pose, scorefxn, kT)

	ab = protocols.abinitio.ClassicAbinitio(fragset3mer, fragset9mer, movemap)

	seqmover = protocols.moves.SequenceMover()

	trialmover = TrialMover(mover_3mer, mc)

Variable Documentation

◆ ab

test.T400_Refinement.ab = protocols.abinitio.ClassicAbinitio(fragset3mer, fragset9mer, movemap)

Referenced by numeric::UniformRotationSampler.generateIcosahedralSamples(), and numeric.proj_angl().

◆ extra_options

test.T400_Refinement.extra_options

◆ fragset3mer

test.T400_Refinement.fragset3mer = core.fragment.ConstantLengthFragSet(3, "../test/data/test3_fragments")

◆ fragset9mer

test.T400_Refinement.fragset9mer = core.fragment.ConstantLengthFragSet(9, "../test/data/test9_fragments")

Referenced by T400_Refinement().

◆ kT

float test.T400_Refinement.kT = 1.0

◆ mc

test.T400_Refinement.mc = MonteCarlo(pose, scorefxn, kT)

◆ minmover

test.T400_Refinement.minmover = protocols.minimization_packing.MinMover()

Referenced by MinToolMover.apply(), RDCToolMover.apply(), PhDocking.apply(), MikeLinkerMover.apply(), aramid_main(), dna_stats(), main(), my_main(), and relax_cenrot_pose().

◆ movemap

test.T400_Refinement.movemap = MoveMap()

◆ mover_3mer

test.T400_Refinement.mover_3mer = protocols.simple_moves.ClassicFragmentMover(fragset3mer, movemap)

◆ n_moves

int test.T400_Refinement.n_moves = 10

◆ pose

test.T400_Refinement.pose = core.import_pose.pose_from_file("../test/data/test_fragments.pdb")

◆ pose_frag

test.T400_Refinement.pose_frag = core.import_pose.pose_from_file("../test/data/test_fragments.pdb")

Referenced by T400_Refinement().

◆ scorefxn

test.T400_Refinement.scorefxn = get_score_function()

◆ seqmover

test.T400_Refinement.seqmover = protocols.moves.SequenceMover()

Referenced by main().

◆ shearmover

test.T400_Refinement.shearmover = protocols.simple_moves.ShearMover(movemap, kT, n_moves)