#include <fstream>
#include <iostream>
#include <cstdlib>
#include <utility/stream_util.hh>
#include <utility/excn/Exceptions.hh>
#include <basic/Tracer.hh>
#include <basic/basic.hh>
#include <devel/init.hh>
#include <core/types.hh>
#include <utility/vector1.hh>
#include <utility/file/FileName.hh>
#include <utility/io/izstream.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <core/io/sequence_comparation/DesignContrast.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <basic/options/option.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/EnergyGraph.hh>
#include <core/scoring/TenANeighborGraph.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/pack/task/TaskFactory.hh>
#include <protocols/minimization_packing/PackRotamersMover.hh>
#include <ObjexxFCL/format.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/packing.OptionKeys.gen.hh>
#include <core/import_pose/import_pose.hh>

Functions
int	isHydroNonPolar (std::string const &resname)

int	isPolarUncharge (std::string const &resname)

int	isNegative (std::string const &resname)

int	isPositive (std::string const &resname)

int	isBoundary (Size const &neighbor)

int	isBuried (Size const &neighbor)

void	statistics (std::string filename)

int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("apps.pilot.yiliu.DC")

Function Documentation

◆ isBoundary()

int isBoundary ( Size const & neighbor )

◆ isBuried()

int isBuried ( Size const & neighbor )

◆ isHydroNonPolar()

int isHydroNonPolar ( std::string const & resname )

◆ isNegative()

int isNegative ( std::string const & resname )

◆ isPolarUncharge()

int isPolarUncharge ( std::string const & resname )

◆ isPositive()

int isPositive ( std::string const & resname )

◆ main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, basic::options::OptionKeys::dc::dc, out::file::design_contrast(), test.T009_Exceptions::e, pyrosetta.distributed.io::get_score_function(), create_a3b_hbs::i, basic::init(), create_a3b_hbs::j, option, basic::options::OptionKeys::lh::fragpdb::out_path, test.Workshop6test::pack_mover, pyrosetta.distributed.io::pose_from_file(), packing::resfile(), beta_nonlocal::score_fxn, statistics(), vancomycin::task, TR, and basic::options::OptionKeys::inout::dbms::user.

◆ statistics()

void statistics ( std::string filename )

References basic::Tracer::Error, lactamize::filename, getline(), isBoundary(), isBuried(), isHydroNonPolar(), isNegative(), isPolarUncharge(), isPositive(), line, create_a3b_hbs::nres, sum(), and TR.

Variable Documentation

◆ TR

basic::Tracer TR("apps.pilot.yiliu.DC") ( "apps.pilot.yiliu.DC" )

static

Referenced by main(), and statistics().

Functions

Variables