design_contrast_and_statistic.cc File Reference

#include <fstream>
#include <cstdlib>
#include <basic/Tracer.hh>
#include <devel/init.hh>
#include <core/types.hh>
#include <utility/vector1.hh>
#include <utility/file/FileName.hh>
#include <core/io/sequence_comparation/DesignContrast.hh>
#include <core/pose/Pose.hh>
#include <basic/options/option.hh>
#include <core/scoring/ScoreFunction.fwd.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/pack/task/operation/TaskOperation.fwd.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/pack/task/TaskFactory.hh>
#include <protocols/minimization_packing/PackRotamersMover.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/packing.OptionKeys.gen.hh>
#include <core/import_pose/import_pose.hh>
#include <utility/excn/Exceptions.hh>

Functions
std::ostream &	writeYamlValue (std::ostream &S, std::string const &name, core::Real value)
std::ostream &	writeYamlValue (std::ostream &S, std::string const &name, bool value)
int	isHydroNonPolar (std::string const &resname)
int	isPolarUncharge (std::string const &resname)
int	isNegative (std::string const &resname)
int	isPositive (std::string const &resname)
int	isBoundary (Size const &neighbor)
int	isBuried (Size const &neighbor)
void	statistics (std::string filename)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("apps.pilot.yiliu.DC")

Function Documentation

isBoundary()

int isBoundary

(

Size const &

neighbor

)

Referenced by statistics().

isBuried()

int isBuried

(

Size const &

neighbor

)

Referenced by statistics().

isHydroNonPolar()

int isHydroNonPolar

(

std::string const &

resname

)

Referenced by statistics().

isNegative()

int isNegative

(

std::string const &

resname

)

Referenced by statistics().

isPolarUncharge()

int isPolarUncharge

(

std::string const &

resname

)

Referenced by statistics().

isPositive()

int isPositive

(

std::string const &

resname

)

Referenced by statistics().

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, basic::options::OptionKeys::dc::dc, out::file::design_contrast(), test.T009_Exceptions::e, create_a3b_hbs::i, basic::init(), create_a3b_hbs::j, option, basic::options::OptionKeys::lh::fragpdb::out_path, test.Workshop6test::pack_mover, pyrosetta.distributed.io::pose_from_file, packing::resfile(), beta_nonlocal::score_fxn, statistics(), vancomycin::task, TR, and basic::options::OptionKeys::inout::dbms::user.

statistics()

void statistics

(

std::string

filename

)

References basic::Tracer::Error, lactamize::filename, getline(), isHydroNonPolar(), isNegative(), isPolarUncharge(), isPositive(), line, create_a3b_hbs::nres, sum(), TR, and writeYamlValue().

Referenced by main().

writeYamlValue() [1/2]

std::ostream& writeYamlValue	(	std::ostream &	S,
		std::string const &	name,
		bool	value
	)

References pyrosetta.distributed.cluster.converters::S, and value.

writeYamlValue() [2/2]

std::ostream& writeYamlValue	(	std::ostream &	S,
		std::string const &	name,
		core::Real	value
	)

References pyrosetta.distributed.cluster.converters::S, and value.

Referenced by statistics().

Variable Documentation

TR

basic::Tracer TR("apps.pilot.yiliu.DC") ( "apps.pilot.yiliu.DC"  )

static

Referenced by main(), and statistics().