|
Rosetta
|
#include <core/types.hh>#include <core/chemical/VariantType.hh>#include <core/chemical/util.hh>#include <core/conformation/Residue.hh>#include <core/conformation/ResidueFactory.hh>#include <core/kinematics/MoveMap.hh>#include <core/scoring/ScoringManager.hh>#include <core/scoring/ScoreFunctionFactory.hh>#include <core/scoring/ScoreFunction.hh>#include <core/scoring/rms_util.hh>#include <core/chemical/rna/util.hh>#include <core/kinematics/FoldTree.hh>#include <core/id/types.hh>#include <core/optimization/CartesianMinimizer.hh>#include <core/optimization/MinimizerOptions.hh>#include <core/pose/util.hh>#include <core/pose/full_model_info/FullModelInfo.hh>#include <core/io/pdb/pdb_writer.hh>#include <core/io/silent/SilentStruct.hh>#include <core/io/silent/SilentFileData.hh>#include <core/io/silent/BinarySilentStruct.hh>#include <core/import_pose/import_pose.hh>#include <devel/init.hh>#include <protocols/stepwise/modeler/rna/StepWiseRNA_Modeler.hh>#include <protocols/stepwise/modeler/options/StepWiseModelerOptions.hh>#include <protocols/stepwise/modeler/rna/util.hh>#include <protocols/stepwise/monte_carlo/rna/TransientCutpointHandler.hh>#include <protocols/rna/denovo/util.hh>#include <protocols/viewer/viewers.hh>#include <protocols/moves/MonteCarlo.hh>#include <basic/options/keys/score.OptionKeys.gen.hh>#include <basic/options/option.hh>#include <basic/options/keys/out.OptionKeys.gen.hh>#include <basic/options/keys/in.OptionKeys.gen.hh>#include <basic/options/keys/rna.OptionKeys.gen.hh>#include <basic/options/keys/OptionKeys.hh>#include <basic/options/option_macros.hh>#include <core/pose/Pose.hh>#include <utility/vector1.hh>#include <numeric/random/random.hh>#include <ObjexxFCL/string.functions.hh>#include <ObjexxFCL/format.hh>#include <fstream>#include <iostream>#include <sstream>#include <string>#include <ctime>#include <list>Typedefs | |
| typedef numeric::xyzMatrix< Real > | Matrix |
Functions | |
| void | setup_design_res (pose::Pose &pose) |
| void | erraser_monte_carlo () |
| void * | my_main (void *) |
| int | main (int argc, char *argv[]) |
| typedef numeric::xyzMatrix< Real > Matrix |
| void erraser_monte_carlo | ( | ) |
References basic::options::OptionKeys::stepwise::protein::cart_min, basic::options::OptionKeys::chemical::chemical, basic::options::OptionKeys::rna::corrected_geo, utility::io::oc::cout, basic::options::OptionKeys::cycles, basic::options::OptionKeys::MonteCarlo::MonteCarlo, kmeans_adaptive_kernel_density_bb_dependent_rotlib::n, in::file::native(), docking::native_pose, basic::options::OptionKeys::stepwise::num_random_samples, basic::options::OptionKeys::optimization::optimization, option, options, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, numeric::random::RandomGenerator::random_element(), numeric::random::rg(), basic::options::OptionKeys::full_model::rna::rna, in::file::s(), basic::options::OptionKeys::full_model::sample_res, oop_conformations::scorefxn, basic::options::OptionKeys::frags::scoring::scoring, setup_design_res(), basic::options::OptionKeys::in::file::silent, basic::options::OptionKeys::stepwise::stepwise, local::temperature, basic::options::OptionKeys::inout::dbms::user, and utility_exit_with_message.
Referenced by my_main().
| int main | ( | int | argc, |
| char * | argv[] | ||
| ) |
References argv, basic::options::OptionKeys::stepwise::protein::cart_min, basic::options::OptionKeys::cycles, test.T009_Exceptions::e, basic::init(), my_main(), NEW_OPT, basic::options::OptionKeys::stepwise::num_random_samples, basic::options::OptionKeys::full_model::sample_res, local::temperature, and viewer_main().
| void* my_main | ( | void * | ) |
References utility::io::oc::cout, erraser_monte_carlo(), and utility::options::OptionKeys::options::exit.
Referenced by main().
| void setup_design_res | ( | pose::Pose & | pose | ) |
References create_a3b_hbs::i, option, and beta_nonlocal::pose.
Referenced by erraser_monte_carlo().
1.9.1