elec_dens_rot_recov.cc File Reference

#include <core/types.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/optimization/AtomTreeMinimizer.hh>
#include <core/optimization/CartesianMinimizer.hh>
#include <core/optimization/symmetry/SymAtomTreeMinimizer.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <utility/excn/Exceptions.hh>
#include <core/pose/Pose.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/pose/symmetry/util.hh>
#include <core/conformation/symmetry/util.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/scoring/electron_density/util.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/Energies.hh>
#include <core/conformation/Residue.hh>
#include <basic/options/option.hh>
#include <basic/options/after_opts.hh>
#include <basic/basic.hh>
#include <basic/database/open.hh>
#include <devel/init.hh>
#include <protocols/symmetry/SetupForSymmetryMover.hh>
#include <protocols/electron_density/SetupForDensityScoringMover.hh>
#include <protocols/minimization_packing/symmetry/SymMinMover.hh>
#include <protocols/minimization_packing/MinMover.hh>
#include <protocols/minimization_packing/symmetry/SymPackRotamersMover.hh>
#include <protocols/moves/MoverContainer.hh>
#include <protocols/monte_carlo/GenericMonteCarloMover.hh>
#include <protocols/simple_moves/MissingDensityToJumpMover.hh>
#include <protocols/viewer/viewers.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/filters/Filter.fwd.hh>
#include <protocols/filters/BasicFilters.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <utility/vector1.hh>
#include <numeric/xyzVector.hh>
#include <numeric/random/random.hh>
#include <protocols/constraint_movers/ConstraintSetMover.hh>
#include <core/scoring/constraints/util.hh>
#include <basic/options/option_macros.hh>
#include <basic/options/keys/constraints.OptionKeys.gen.hh>
#include <basic/options/keys/symmetry.OptionKeys.gen.hh>
#include <basic/options/keys/edensity.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/relax.OptionKeys.gen.hh>
#include <fstream>
#include <iostream>
#include <string>
#include <sstream>
#include <core/import_pose/import_pose.hh>
#include <basic/Tracer.hh>

Classes
class	ElecDensMinPackMinReporter
class	ElecDensMinPackMinMover

Namespaces
	globals

Functions
bool	output_cmp (std::string line1, std::string line2)
void *	my_main (void *)
int	main (int argc, char *argv[])

Variables
ElecDensMinPackMinReporter	globals::reporter

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, basic::options::OptionKeys::msd::debug, basic::options::OptionKeys::magnesium::montecarlo::dump, test.T009_Exceptions::e, basic::init(), my_main(), NEW_OPT, basic::options::option, erraser_single_res_analysis::out, lactamize::outfile, create_a3b_hbs::prefix, ElecDensMinPackMinReporter::print_flips(), globals::reporter, and viewer_main().

my_main()

void* my_main

(

void *

)

References utility::io::oc::cerr, utility::excn::Exception::show(), and basic::options::OptionKeys::symmetry::symmetry.

Referenced by main().

output_cmp()

bool output_cmp	(	std::string	line1,
		std::string	line2
	)

Referenced by ElecDensMinPackMinReporter::print_flips().