rna_pdb_scoring.cc File Reference

#include <core/types.hh>
#include <core/chemical/AA.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/conformation/Residue.hh>
#include <core/scoring/ScoringManager.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/sequence/util.hh>
#include <core/sequence/Sequence.hh>
#include <devel/init.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/options/util.hh>
#include <basic/options/option_macros.hh>
#include <protocols/viewer/viewers.hh>
#include <utility/excn/Exceptions.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/options/keys/edensity.OptionKeys.gen.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pose/util.hh>
#include <core/chemical/rna/RNA_FittedTorsionInfo.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/EnergyGraph.hh>
#include <core/scoring/Energies.hh>
#include <core/kinematics/FoldTree.hh>
#include <utility/vector1.hh>
#include <utility/io/ozstream.hh>
#include <utility/io/izstream.hh>
#include <iostream>
#include <string>

Functions
void	add_virtual_res (core::pose::Pose &pose, bool set_res_as_root)
void	pdb_scoring ()
void *	my_main (void *)
int	main (int argc, char *argv[])

Function Documentation

add_virtual_res()

void add_virtual_res	(	core::pose::Pose &	pose,
		bool	set_res_as_root
	)

References utility::io::oc::cout, create_a3b_hbs::nres, and beta_nonlocal::pose.

Referenced by pdb_scoring().

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, test.T009_Exceptions::e, basic::init(), my_main(), NEW_OPT, and viewer_main().

my_main()

void* my_main

(

void *

)

References utility::options::OptionKeys::options::exit, and pdb_scoring().

Referenced by main().

pdb_scoring()

void pdb_scoring

(

)

References add_virtual_res(), basic::options::OptionKeys::chemical::chemical, utility::io::oc::cout, pyrosetta::create_score_function, in::file::native(), option, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, basic::options::OptionKeys::in::file::residue_type_set, oop_conformations::scorefxn, basic::options::OptionKeys::frags::scoring::scoring, show(), and basic::options::OptionKeys::inout::dbms::user.

Referenced by my_main().