score_vs_rmsd Namespace Reference

Functions
def	plot_job (job, color)
def	parse_new_source (subjob, rmsds, scores)
def	parse_old_source (subjob, rmsds, scores)

Variables
	parser = argparse.ArgumentParser()
	nargs
	type
	int
	default
	arguments = parser.parse_args()
list	colors
	linestyle
	color
	zorder
	job = arguments.job
	rmsds = helpers.load_array(job, 'rmsds')[1:]
	scores = helpers.load_array(job, 'scores')[1:]
	frames = len(scores)
int	skip = frames // 500
	estimator = gaussian_kde([rmsds[::skip], scores[::skip]])
	density = estimator.evaluate([rmsds, scores])
dictionary	style = {}

Function Documentation

parse_new_source()

def score_vs_rmsd.parse_new_source	(		subjob,
			rmsds,
			scores
	)

References basic::database.open().

Referenced by plot_job().

parse_old_source()

def score_vs_rmsd.parse_old_source	(		subjob,
			rmsds,
			scores
	)

References run_backbone.float, max(), and basic::database.open().

Referenced by plot_job().

plot_job()

def score_vs_rmsd.plot_job	(		job,
			color
	)

References ObjexxFCL.len(), parse_new_source(), and parse_old_source().

Variable Documentation

arguments

score_vs_rmsd.arguments = parser.parse_args()

color

score_vs_rmsd.color

colors

int score_vs_rmsd.colors

Initial value:

=  [
        '#204a87',  # Blue
        '#a40000',  # Red
        '#4e9a06',  # Green
        '#ce5c00',  # Orange
        '#5c3566']

default

score_vs_rmsd.default

density

score_vs_rmsd.density = estimator.evaluate([rmsds, scores])

Referenced by SimulateCryoMover.append_to_density(), SimulateCryoMover.apply(), density_grid_search(), main(), and CrystFFTDock.writeMRC().

estimator

score_vs_rmsd.estimator = gaussian_kde([rmsds[::skip], scores[::skip]])

frames

score_vs_rmsd.frames = len(scores)

Referenced by SwapElementsMover1.apply(), SwapElementsMover2.apply(), apply_all_frags(), check_quality_of_cluster_frags(), compute_min_mean_rmsd_frag(), filter_frags(), main(), SwapElementsMover1.pick_fragments(), SwapElementsMover2.pick_fragments(), pick_fragments(), VarLengthBuildKristin.public_pick_fragments(), and NativeEnsemble.write_schema_to_db().

int

score_vs_rmsd.int

job

score_vs_rmsd.job = arguments.job

linestyle

score_vs_rmsd.linestyle

nargs

score_vs_rmsd.nargs

parser

score_vs_rmsd.parser = argparse.ArgumentParser()

rmsds

score_vs_rmsd.rmsds = helpers.load_array(job, 'rmsds')[1:]

scores

score_vs_rmsd.scores = helpers.load_array(job, 'scores')[1:]

skip

int score_vs_rmsd.skip = frames // 500

style

dictionary score_vs_rmsd.style = {}

type

score_vs_rmsd.type

zorder

score_vs_rmsd.zorder