find_ligand_local_res.cc File Reference

#include <devel/init.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/Pose.fwd.hh>
#include <core/import_pose/pose_stream/PDBPoseInputStream.hh>
#include <core/import_pose/import_pose.hh>
#include <core/chemical/Atom.hh>
#include <core/chemical/AtomType.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/util.hh>
#include <protocols/electron_density/util.hh>
#include <protocols/electron_density/DensitySymmInfo.hh>
#include <protocols/electron_density/SetupForDensityScoringMover.hh>
#include <core/scoring/electron_density/ElectronDensity.hh>
#include <core/scoring/electron_density/util.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/packing.OptionKeys.gen.hh>
#include <basic/options/keys/symmetry.OptionKeys.gen.hh>
#include <basic/options/keys/edensity.OptionKeys.gen.hh>
#include <ObjexxFCL/format.hh>
#include <numeric/xyzMatrix.hh>
#include <numeric/xyzVector.hh>
#include <numeric/xyzVector.io.hh>
#include <numeric/random/random.hh>
#include <utility/io/izstream.hh>
#include <utility/io/ozstream.hh>
#include <utility/string_util.hh>
#include <basic/Tracer.hh>
#include <cmath>
#include <limits>
#include <utility/file/FileName.hh>
#include <utility/file/file_sys_util.hh>
#include <utility/excn/Exceptions.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/conformation/ResidueFactory.hh>

Functions
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("amuenks.ligand_local_res")

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, score_vs_rmsd::density, test.T009_Exceptions::e, basic::options::OptionKeys::optE::fixed, run_backbone::float, PREcst::fname, basic::options::OptionKeys::edensity::grid_spacing, basic::init(), enumerate_junctions::int, basic::options::OptionKeys::ufv::left, basic::options::OptionKeys::mh::filter::lig, basic::options::OptionKeys::edensity::mapfile, basic::options::OptionKeys::edensity::mapreso, create_a3b_hbs::nres, basic::options::option, kmeans_adaptive_kernel_density_bb_dependent_rotlib::p, pyrosetta.distributed.io::pose_from_file(), ObjexxFCL::pow(), basic::options::OptionKeys::ufv::right, basic::options::OptionKeys::in::file::s, basic::options::TR, ObjexxFCL::FArray3D< T >::u1(), ObjexxFCL::FArray3D< T >::u2(), ObjexxFCL::FArray3D< T >::u3(), x, predPRE::y, and predPRE::z.

Variable Documentation

TR

basic::Tracer TR("amuenks.ligand_local_res") ( "amuenks.ligand_local_res"  )

static