test_chain_sequence.cc File Reference

Test the PDBInfo::chain_sequence functionality. More...

#include <devel/init.hh>
#include <core/import_pose/import_pose.hh>
#include <core/chemical/AA.hh>
#include <core/chemical/ResidueType.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/sequence/Sequence.hh>
#include <core/sequence/SequenceAlignment.hh>
#include <core/sequence/util.hh>
#include <core/id/SequenceMapping.hh>
#include <utility/excn/Exceptions.hh>
#include <basic/Tracer.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/run.OptionKeys.gen.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/OptionKeys.hh>

Functions
void	register_options ()
std::string	convert_to_olc (utility::vector1< std::string > tlc_seq_vec)
	Super simple function to convert three-letter codes to one-letter codeswith a little lbit of logic for stuff Rosetta auto-converts. More...
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("test_chain_sequence")

Detailed Description

Test the PDBInfo::chain_sequence functionality.

Author

P. Douglas Renfrew (doug..nosp@m.renf.nosp@m.rew@g.nosp@m.mail.nosp@m..com')

Function Documentation

convert_to_olc()

std::string convert_to_olc

(

utility::vector1< std::string >

tlc_seq_vec

)

Super simple function to convert three-letter codes to one-letter codeswith a little lbit of logic for stuff Rosetta auto-converts.

References basic::options::OptionKeys::chemical::chemical.

Referenced by main().

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, convert_to_olc(), utility::io::oc::cout, test.T009_Exceptions::e, create_a3b_hbs::i, basic::init(), basic::options::option, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, register_options(), basic::options::OptionKeys::in::file::s, and basic::options::OptionKeys::inout::dbms::user.

register_options()

void register_options

(

)

References utility::options::OptionCollection::add_relevant(), basic::options::OptionKeys::in::file::l, basic::options::option, basic::options::OptionKeys::run::preserve_header, and basic::options::OptionKeys::in::file::s.

Referenced by main().

Variable Documentation

TR

basic::Tracer TR("test_chain_sequence") ( "test_chain_sequence"  )

static