collect_rotamer_contacts.cc File Reference

#include <devel/init.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <core/pose/annotated_sequence.hh>
#include <core/pose/Pose.hh>
#include <core/import_pose/import_pose.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <core/conformation/Residue.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueType.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/pose/PDBInfo.hh>
#include <core/io/silent/SilentStruct.hh>
#include <core/io/silent/SilentStructFactory.hh>
#include <core/io/silent/BinarySilentStruct.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/pack/rotamer_set/RotamerSet.hh>
#include <core/pack/rotamer_set/RotamerSets.hh>
#include <core/pack/dunbrack/RotamerLibrary.hh>
#include <core/pack/dunbrack/DunbrackRotamer.hh>
#include <core/pack/dunbrack/SingleResidueDunbrackLibrary.hh>
#include <utility/vector1.hh>
#include <utility/io/izstream.hh>
#include <iostream>
#include <fstream>

Classes
struct	myspace::DataStruct

Namespaces
	myspace

Functions
Real	myspace::periodic (Real ang)
Real	myspace::nonperiodic (Real ang)
bool	myspace::is_contacting (conformation::Residue const &rsd1, conformation::Residue const &rsd2)
Size	myspace::find_nearest_rot (utility::vector1< Real > chi, utility::vector1< pack::dunbrack::Real4 > rotchis)
Size	myspace::aa_to_id (std::string const &aa)
std::string	myspace::id_to_aa (Size const &id)
void	myspace::get_data_index (pose::Pose const &pose, Size const ires, utility::vector1< DataStruct > const &data, Size &data_index, Size &rot_index)
void	myspace::scan_contact (pose::Pose const &pose, Size const &winsize, utility::vector1< DataStruct > &data)
void	myspace::collect_silent (pose::Pose &pose, Size const &winsize, utility::vector1< DataStruct > &data)
utility::vector1< DataStruct >	myspace::initialize_data ()
void	myspace::write_silent (utility::vector1< DataStruct > &data, std::string const prefix)
void	myspace::read_contact (std::string const infile, utility::vector1< DataStruct > &data)
int	main (int argc, char *argv[])

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, utility::io::oc::cerr, myspace::collect_silent(), data, create_a3b_hbs::i, basic::init(), myspace::initialize_data(), in::file::l(), basic::options::OptionKeys::in::file::list, NEW_OPT, option, predPRE::pdbname, pdbs, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, create_a3b_hbs::prefix, myspace::read_contact(), myspace::scan_contact(), basic::options::OptionKeys::inout::dbms::user, window_size, and myspace::write_silent().