◆ apply()
References a, job_manager::app, compute_difference::b, utility::io::oc::cout, basic::options::OptionKeys::holes::dalphaball, test.T009_Exceptions::e, test.T220_AtomAtomPairEnergies::fa_elec, fill_hbond_e(), PREcst::fname, basic::options::OptionKeys::holes::h_mode, create_a3b_hbs::i, subloop_histogram::iterator, solution_counts::lines, local_rms(), local_rms_window(), surface_app::native, docking::native_pose, basic::options::option, option, erraser_single_res_analysis::out, basic::options::OptionKeys::corrections::score::p_aa_pp, parse_ss_regions(), kic_runner::pdb, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, create_a3b_hbs::prefix, basic::options::OptionKeys::out::prefix, docking::s, basic::options::OptionKeys::frags::scoring::scoring, basic::options::OptionKeys::out::sf, ObjexxFCL::string_of(), predPRE::t, tag, tag_from_pose(), basic::options::OptionKeys::inout::dbms::user, and basic::options::OptionKeys::corrections::water::water.
Referenced by pyrosetta.distributed.tasks.rosetta_scripts.BaseRosettaScriptsTask::execute().
The documentation for this class was generated from the following file: