test.T220_AtomAtomPairEnergies Namespace Reference

Variables
	extra_options
	test_pose = rosetta.core.import_pose.pose_from_file('../test/data/test_dock.pdb')
	residue_1 = test_pose.residue(275)
	residue_2 = test_pose.residue(55)
	sfxn = create_score_function('ref2015')
	atr_total
	rep_total
	solv_total
	fa_elec_total
int	atom_index_1 = i+1
int	atom_index_2 = j+1
	atr
	rep
	solv
	fa_elec
	emap = core.scoring.EMapVector()

Variable Documentation

atom_index_1

int test.T220_AtomAtomPairEnergies.atom_index_1 = i+1

atom_index_2

int test.T220_AtomAtomPairEnergies.atom_index_2 = j+1

atr

test.T220_AtomAtomPairEnergies.atr

Referenced by setup_grids().

atr_total

test.T220_AtomAtomPairEnergies.atr_total

emap

test.T220_AtomAtomPairEnergies.emap = core.scoring.EMapVector()

extra_options

test.T220_AtomAtomPairEnergies.extra_options

fa_elec

test.T220_AtomAtomPairEnergies.fa_elec

Referenced by CustomMover.apply(), HolesTrainingDataMover.apply(), benzene_pair_score_test(), bzip_test(), dna_coupled_rotamer_design_test(), dna_specificity_test(), dostuff(), endo_test(), get_elec_score(), get_relax_scorefxn(), harvest_motifs_one(), intra_dna_stats(), juke_sam_test(), luxr_test(), main(), multivec2sf(), not1_test(), DockGlycansProtocol.prepare_scoring_function(), process_for_motifs(), rna_protein_prepack_test(), rna_protein_rb_test(), rna_protein_repack_test(), FastRelaxPerformanceBenchmark.setup_for_sc12he(), InteractionGraphPerformanceBenchmark.setup_for_sc12he(), FastRelaxPerformanceBenchmark.setup_for_sp2hecart(), InteractionGraphPerformanceBenchmark.setup_for_sp2hecart(), sf2multivec(), tf_specificity_test(), zf_test(), and zif268_test().

fa_elec_total

test.T220_AtomAtomPairEnergies.fa_elec_total

rep

test.T220_AtomAtomPairEnergies.rep

Referenced by hbonds_to_ptnres(), main(), safe_duration_cast.safe_duration_cast(), setup_grids(), and store_hb_counts().

rep_total

test.T220_AtomAtomPairEnergies.rep_total

residue_1

test.T220_AtomAtomPairEnergies.residue_1 = test_pose.residue(275)

residue_2

test.T220_AtomAtomPairEnergies.residue_2 = test_pose.residue(55)

sfxn

test.T220_AtomAtomPairEnergies.sfxn = create_score_function('ref2015')

solv

test.T220_AtomAtomPairEnergies.solv

solv_total

test.T220_AtomAtomPairEnergies.solv_total

test_pose

test.T220_AtomAtomPairEnergies.test_pose = rosetta.core.import_pose.pose_from_file('../test/data/test_dock.pdb')