JDmover Class Reference

local mover for testing purposes More...

Inheritance diagram for JDmover:

Public Member Functions
	JDmover ()
std::string	get_name () const override
	~JDmover () override=default
core::Real	periodic_range (core::Real a, core::Real x)
std::string	ABGEO (core::Real phi, core::Real psi, core::Real omega)
void	apply (core::pose::Pose &pose) override
protocols::moves::MoverOP	fresh_instance () const override
bool	reinitialize_for_each_job () const override
bool	reinitialize_for_new_input () const override
Size	get_input_pose_length ()
void	print_features ()

Private Attributes
std::map< std::pair< Size, Size >, Size >	contact_counts_
Size	input_pose_count_
Size	input_pose_length_
std::string	input_pose_sequence_
std::map< Size, Size >	ss_E_counts_
std::map< Size, Size >	ss_H_counts_
std::map< Size, Size >	ss_L_counts_
std::map< Size, Size >	bbin_A_counts_
std::map< Size, Size >	bbin_B_counts_
std::map< Size, Size >	bbin_E_counts_
std::map< Size, Size >	bbin_G_counts_
std::map< Size, Size >	bbin_O_counts_

Detailed Description

local mover for testing purposes

Constructor & Destructor Documentation

JDmover()

JDmover::JDmover ( )

inline

~JDmover()

JDmover::~JDmover ( )

overridedefault

Member Function Documentation

ABGEO()

std::string JDmover::ABGEO ( core::Real  phi, core::Real  psi, core::Real  omega  )

inline

References ObjexxFCL::abs(), basic::options::OptionKeys::AnchoredDesign::filters::omega, periodic_range(), oop_conformations::phi, and oop_conformations::psi.

apply()

void JDmover::apply ( core::pose::Pose &  pose )

inlineoverride

References ObjexxFCL::abs(), build_jacobian::distance, contactMap::distance_cutoff(), create_a3b_hbs::i, create_a3b_hbs::j, option, beta_nonlocal::pose, and utility_exit_with_message.

Referenced by pyrosetta.distributed.tasks.rosetta_scripts.BaseRosettaScriptsTask::execute().

fresh_instance()

protocols::moves::MoverOP JDmover::fresh_instance ( ) const

inlineoverride

get_input_pose_length()

Size JDmover::get_input_pose_length ( )

inline

get_name()

std::string JDmover::get_name ( ) const

inlineoverride

periodic_range()

core::Real JDmover::periodic_range ( core::Real  a, core::Real  x  )

inline

References a, numeric::mod(), and x.

print_features()

void JDmover::print_features ( )

inline

References utility::io::oc::cout, ObjexxFCL::format::F(), create_a3b_hbs::i, subloop_histogram::iterator, create_a3b_hbs::j, and kmeans_adaptive_kernel_density_bb_dependent_rotlib::p.

reinitialize_for_each_job()

bool JDmover::reinitialize_for_each_job ( ) const

inlineoverride

reinitialize_for_new_input()

bool JDmover::reinitialize_for_new_input ( ) const

inlineoverride

Member Data Documentation

bbin_A_counts_

std::map<Size,Size> JDmover::bbin_A_counts_

private

bbin_B_counts_

std::map<Size,Size> JDmover::bbin_B_counts_

private

bbin_E_counts_

std::map<Size,Size> JDmover::bbin_E_counts_

private

bbin_G_counts_

std::map<Size,Size> JDmover::bbin_G_counts_

private

bbin_O_counts_

std::map<Size,Size> JDmover::bbin_O_counts_

private

contact_counts_

std::map<std::pair<Size,Size>, Size> JDmover::contact_counts_

private

input_pose_count_

Size JDmover::input_pose_count_

private

input_pose_length_

Size JDmover::input_pose_length_

private

input_pose_sequence_

std::string JDmover::input_pose_sequence_

private

ss_E_counts_

std::map<Size,Size> JDmover::ss_E_counts_

private

ss_H_counts_

std::map<Size,Size> JDmover::ss_H_counts_

private

ss_L_counts_

std::map<Size,Size> JDmover::ss_L_counts_

private

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The documentation for this class was generated from the following file:

• src/apps/pilot/dekim/decoy_features.cc