numeric::AgglomerativeHierarchicalClusterer Class Reference

#include <agglomerative_hierarchical_clustering.hh>

Inheritance diagram for numeric::AgglomerativeHierarchicalClusterer:

Public Member Functions
virtual	~AgglomerativeHierarchicalClusterer ()=default
utility::vector1< ClusteringTreeNodeOP >	cluster (utility::vector1< utility::vector1< Real > > &dm, Size n)
virtual void	comparator (utility::vector1< utility::vector1< Real > > &distance_matrix, utility::vector1< Size > const &members1, utility::vector1< Size > const &members2, ClusterOptions &co)=0

Constructor & Destructor Documentation

~AgglomerativeHierarchicalClusterer()

virtual numeric::AgglomerativeHierarchicalClusterer::~AgglomerativeHierarchicalClusterer ( )

virtualdefault

Member Function Documentation

cluster()

utility::vector1< ClusteringTreeNodeOP > numeric::AgglomerativeHierarchicalClusterer::cluster	(	utility::vector1< utility::vector1< Real > > &	dm,
		Size	n
	)

References comparator(), basic::options::OptionKeys::contactMap::distance_matrix, create_a3b_hbs::i, numeric::ClusterOptions::min_, numeric::ClusterOptions::min_i_, numeric::ClusterOptions::min_j_, numeric::ClusteringTreeNode::newClusteringTreeNode(), numeric::ClusterOptions::node1_, numeric::ClusterOptions::node2_, and erraser_single_res_analysis::out.

Referenced by main().

comparator()

virtual void numeric::AgglomerativeHierarchicalClusterer::comparator ( utility::vector1< utility::vector1< Real > > &  distance_matrix, utility::vector1< Size > const &  members1, utility::vector1< Size > const &  members2, ClusterOptions &  co  )

pure virtual

Implemented in numeric::CompleteLinkClusterer, numeric::AverageLinkClusterer, and numeric::SingleLinkClusterer.

Referenced by cluster().

---

The documentation for this class was generated from the following files:

• src/numeric/agglomerative_hierarchical_clustering.hh
• src/numeric/agglomerative_hierarchical_clustering.cc