NMcorrelation.cc File Reference

#include <protocols/normalmode/NormalMode.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/pose/PDBInfo.hh>
#include <core/import_pose/import_pose.hh>
#include <core/id/AtomID.hh>
#include <core/id/AtomID_Map.hh>
#include <core/scoring/rms_util.hh>
#include <core/conformation/Residue.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/ResidueTypeSet.fwd.hh>
#include <core/types.hh>
#include <devel/init.hh>
#include <sys/time.h>

Namespaces
	myspace

Functions
void	myspace::CArmsd_and_superimpose_pose (pose::Pose &pose, pose::Pose &ref_pose, std::map< Size, Size > const resmap, Real &gdtmm, Real &rmsd)
void	myspace::get_resmap (pose::Pose const &pose, pose::Pose const &ref_pose, std::map< Size, Size > &resmap, std::map< Size, Size > &pose_resmap)
void	myspace::find_best_projection (pose::Pose const &pose, pose::Pose const &pose_ref, std::map< Size, Size > const resmap, std::map< Size, Size > const pose_resmap, utility::vector1< utility::vector1< Vector > > const vecs, utility::vector1< Real > const importance, utility::vector1< Real > &proj_scale, utility::vector1< Vector > &proj_vec)
utility::vector1< Vector >	myspace::project (Real const scale, utility::vector1< Real > const proj_scale, utility::vector1< utility::vector1< Vector > > const vecs)
pose::Pose	myspace::generate_proj_pose (pose::Pose const &pose_init, utility::vector1< Vector > proj_vec)
int	main (int argc, char *argv[])

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, myspace::CArmsd_and_superimpose_pose(), utility::io::oc::cout, myspace::find_best_projection(), basic::options::OptionKeys::cluster::gdtmm, myspace::get_resmap(), basic::init(), NEW_OPT, option, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, average_rmsds::rmsd, in::file::s(), subloop_histogram::size, and basic::options::OptionKeys::inout::dbms::user.