XMLprinterMover Class Reference

Inheritance diagram for XMLprinterMover:

Public Member Functions
	XMLprinterMover ()
virtual void	apply (core::pose::Pose &pose)
virtual protocols::moves::MoverOP	clone () const
virtual std::string	get_name () const
virtual protocols::moves::MoverOP	fresh_instance () const
core::pack::task::TaskFactoryOP	setup_tf (core::pack::task::TaskFactoryOP task_factory)
	load custom TaskOperations according to an xml-like utility::tag file More...
std::set< core::Size >	fill_designable_set (core::pose::Pose &pose, core::pack::task::TaskFactoryOP &tf)
	return the set of residues that are designable based given pose More...
std::set< core::Size >	fill_packable_set (core::pose::Pose &pose, core::pack::task::TaskFactoryOP &tf)
	return the set of residues that are packable based given pose More...
void	write_output_file (core::pose::Pose &pose, std::string filename, std::set< core::Size > design_set, std::set< core::Size > packable_set)
	, write individual files for each input structure More...

Private Attributes
scoring::ScoreFunctionOP	scorefxn_
bool	output_files_
bool	pymol_selection_

Constructor & Destructor Documentation

XMLprinterMover()

XMLprinterMover::XMLprinterMover

(

)

References XMLprinter::make_individual_files, option, and XMLprinter::print_pymol_selection.

Member Function Documentation

apply()

void XMLprinterMover::apply ( core::pose::Pose &  pose )

virtual

References lactamize::filename, fill_designable_set(), predPRE::pdbname, beta_nonlocal::pose, setup_tf(), and TR.

Referenced by pyrosetta.distributed.tasks.rosetta_scripts.BaseRosettaScriptsTask::execute().

clone()

virtual protocols::moves::MoverOP XMLprinterMover::clone ( ) const

inlinevirtual

fill_designable_set()

std::set< Size > XMLprinterMover::fill_designable_set	(	core::pose::Pose &	pose,
		core::pack::task::TaskFactoryOP &	tf
	)

return the set of residues that are designable based given pose

References create_a3b_hbs::ii, beta_nonlocal::pose, test.G200_Module_Region::tf, and TR.

fill_packable_set()

std::set< Size > XMLprinterMover::fill_packable_set	(	core::pose::Pose &	pose,
		core::pack::task::TaskFactoryOP &	tf
	)

return the set of residues that are packable based given pose

References create_a3b_hbs::ii, beta_nonlocal::pose, test.G200_Module_Region::tf, and TR.

fresh_instance()

virtual protocols::moves::MoverOP XMLprinterMover::fresh_instance ( ) const

inlinevirtual

get_name()

virtual std::string XMLprinterMover::get_name ( ) const

inlinevirtual

setup_tf()

core::pack::task::TaskFactoryOP XMLprinterMover::setup_tf

(

core::pack::task::TaskFactoryOP

task_factory

)

load custom TaskOperations according to an xml-like utility::tag file

References subloop_histogram::iterator, option, optE::parse_tagfile(), test.G204_Module_ScoreAnalysis::tops, and basic::options::OptionKeys::inout::dbms::user.

write_output_file()

void XMLprinterMover::write_output_file	(	core::pose::Pose &	pose,
		std::string	filename,
		std::set< core::Size >	design_set,
		std::set< core::Size >	packable_set
	)

, write individual files for each input structure

References utility::io::ozstream::close(), end, lactamize::filename, utility::io::ozstream::open(), localrmsd::output_name, beta_nonlocal::pose, and TR.

Member Data Documentation

output_files_

bool XMLprinterMover::output_files_

private

pymol_selection_

bool XMLprinterMover::pymol_selection_

private

scorefxn_

scoring::ScoreFunctionOP XMLprinterMover::scorefxn_

private

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The documentation for this class was generated from the following file:

• src/apps/pilot/stranges/xml_task_printer.cc