ProfileScore.hh File Reference

FragmentScoringMethod forward declaration. More...

#include <core/types.hh>
#include <protocols/frag_picker/scores/ProfileScore.fwd.hh>
#include <protocols/frag_picker/scores/CachingScoringMethod.hh>
#include <protocols/frag_picker/scores/FragmentScoreMap.fwd.hh>
#include <core/sequence/SequenceProfile.hh>
#include <core/sequence/ScoringScheme.fwd.hh>
#include <utility/vector1.hh>

Classes
class	protocols::frag_picker::scores::ProfileScore
	a fragment candidate More...
class	protocols::frag_picker::scores::MakeProfileScore

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::frag_picker
	protocols::frag_picker::scores

Detailed Description

FragmentScoringMethod forward declaration.

scores a fragment by L1 profile score

scores a fragment by weighting L1 profile distances by residue type

scores a fragment by Blosum62 profile score

scores a fragment by an amino acid sequence identity

Author

Dominik Gront (dgron.nosp@m.t@ch.nosp@m.em.uw.nosp@m..edu.nosp@m..pl)

Robert Vernon