fragment_scoring_utilities.hh File Reference

functions and data types common for fragment scoring More...

#include <core/types.hh>
#include <utility/vector1.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::frag_picker
	protocols::frag_picker::scores

Functions
void	protocols::frag_picker::scores::do_one_line (core::Size start_i, core::Size start_j, Matrix &small_scores, core::Size frag_len, Matrix &frag_scores)
void	protocols::frag_picker::scores::rolling_score (Matrix &small_scores, core::Size frag_len, Matrix &frag_scores)
void	protocols::frag_picker::scores::create_cache (utility::vector1< core::Size > &frag_sizes, core::Size query_len, core::Size longest_vall_chunk, utility::vector1< Matrix > &cache)
void	protocols::frag_picker::scores::allocate_matrix (core::Size i_size, core::Size j_size, Matrix &dst)

Detailed Description

functions and data types common for fragment scoring

Author

Dominik Gront