FoldTree.cc File Reference

Fold tree class. More...

#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/util.hh>
#include <core/id/SequenceMapping.hh>
#include <basic/Tracer.hh>
#include <utility/exit.hh>
#include <utility/py/PyAssert.hh>
#include <ObjexxFCL/format.hh>
#include <ObjexxFCL/string.functions.hh>
#include <ObjexxFCL/FArray2D.hh>
#include <algorithm>
#include <list>
#include <string>
#include <iostream>

Namespaces
	core
	A class for reading in the atom type properties.
	core::kinematics

Functions
static basic::Tracer	TR ("core.kinematics.FoldTree")
bool	core::kinematics::operator== (FoldTree const &a, FoldTree const &b)
bool	core::kinematics::operator!= (const FoldTree &a, const FoldTree &b)
std::ostream &	core::kinematics::operator<< (std::ostream &os, FoldTree const &t)
std::istream &	core::kinematics::operator>> (std::istream &is, FoldTree &t)

Detailed Description

Fold tree class.

Author

Phil Bradley

Function Documentation

TR()

static basic::Tracer TR ( "core.kinematics.FoldTree"  )

static

Referenced by core::kinematics::FoldTree::check_edges_for_atom_info(), core::kinematics::FoldTree::check_fold_tree(), core::kinematics::FoldTree::cut_edge(), core::kinematics::FoldTree::cut_random_edge(), core::kinematics::FoldTree::cutpoint_by_jump(), core::kinematics::FoldTree::delete_edge(), core::kinematics::FoldTree::delete_jump_and_intervening_cutpoint(), core::kinematics::FoldTree::delete_jump_seqpos(), core::kinematics::FoldTree::delete_segment(), core::kinematics::FoldTree::delete_seqpos_simple(), core::kinematics::FoldTree::delete_unordered_edge(), core::kinematics::FoldTree::edge_label(), core::kinematics::FoldTree::insert_fold_tree_by_jump(), core::kinematics::FoldTree::reassign_atoms_for_intra_residue_stubs(), core::kinematics::FoldTree::renumber_jumps(), core::kinematics::FoldTree::reorder(), core::kinematics::FoldTree::replace_edge(), core::kinematics::FoldTree::slide_cutpoint(), core::kinematics::FoldTree::slide_jump(), core::kinematics::FoldTree::tree_from_jumps_and_cuts(), core::kinematics::FoldTree::update_edge_label(), core::kinematics::FoldTree::update_edge_labels(), and core::kinematics::FoldTree::update_num_jump().