pose_io.cc File Reference

Pose input/output function definitions for carbohydrate-specific data formats. More...

#include <core/io/carbohydrates/pose_io.hh>
#include <core/types.hh>
#include <core/chemical/carbohydrates/CarbohydrateInfo.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/Conformation.hh>
#include <core/conformation/carbohydrates/GlycanTreeSet.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/carbohydrates/util.hh>
#include <basic/Tracer.hh>
#include <utility/exit.hh>
#include <utility/vector1.hh>
#include <utility/io/ozstream.hh>
#include <sstream>

Namespaces
	core
	A class for reading in the atom type properties.
	core::io
	core::io::carbohydrates

Functions
static basic::Tracer	TR ("core.io.carbohydrates.pose_io")
utility::vector1< std::pair< core::uint, std::string > >	core::io::carbohydrates::sugar_modifications_from_suffix (std::string const &suffix)
	Parse sugar code suffixes to extract a list of sugar modifications with their corresponding positions. More...
std::string	core::io::carbohydrates::residue_gws_string (core::pose::Pose const &pose, core::uint const seqpos)
	Read a CFG structure from a GWS-formatted string and load into a pose. More...
std::string	core::io::carbohydrates::residue_range_gws_string (core::pose::Pose const &pose, core::uint const begin, core::uint const end)
	Return a GWS-formatted string for each carbohydrate residue in the given sequence range, including branches. More...
std::string	core::io::carbohydrates::chain_gws_string (core::pose::Pose const &pose, core::uint const chain_id)
	Return a GWS-formatted string for the given carbohydrate chain, including branches. More...
void	core::io::carbohydrates::dump_gws_chain (core::pose::Pose const &pose, core::uint const chain_id, std::string const &filename)
	Write the GlycoWorkbench structure file for the given pose chain to <filename>. More...
void	core::io::carbohydrates::dump_gws (core::pose::Pose const &pose, std::string const &filename)
	Write the GlycoWorkbench structure file for all carbohydrate chains of the given pose to <filename>. More...
core::uint	core::io::carbohydrates::char_to_int (char const char_in)
	Given a char, parse it as an integer. More...

Detailed Description

Pose input/output function definitions for carbohydrate-specific data formats.

Author

Labonte JWLab.nosp@m.onte.nosp@m.@jhu..nosp@m.edu

Function Documentation

TR()

static basic::Tracer TR ( "core.io.carbohydrates.pose_io"  )

static