PsiPredInterface.cc File Reference

#include <core/io/external/PsiPredInterface.hh>
#include <core/conformation/Conformation.hh>
#include <core/pose/Pose.hh>
#include <basic/Tracer.hh>
#include <utility>
#include <utility/string_util.hh>
#include <utility/io/izstream.hh>
#include <utility/file/file_sys_util.hh>

Namespaces
	core
	A class for reading in the atom type properties.
	core::io
	core::io::external

Functions
static basic::Tracer	TR ("core.io.external.psipredinterface")
void	core::io::external::runpsipred_name_mangle_check (std::string &filename, std::string const &ref_filename, std::string const &extension)
utility::vector1< core::Real >	core::io::external::generate_prob (PsiPredResult const &psipred_result, std::string desired_ss)
	generates scores for each residue based on psipred confidence and the desired secondary structure More...
utility::vector1< core::Size >	core::io::external::nonmatching_residues (std::string const &blueprint_ss, std::string const &pred_ss)
	finds which positions in the blueprint and predicted secondary structure string don't match returns a vector of the residue numbers More...

Function Documentation

TR()

static basic::Tracer TR ( "core.io.external.psipredinterface"  )

static