stdev_util.cc File Reference

encodes 'reasonable' assumptions about sampling stdevs. More...

#include <protocols/recces/stdev_util.hh>
#include <protocols/recces/sampler/MC_Comb.hh>
#include <protocols/recces/sampler/MC_Loop.hh>
#include <protocols/recces/sampler/MC_OneTorsion.hh>
#include <protocols/recces/sampler/rna/MC_RNA_KIC_Sampler.hh>
#include <protocols/recces/sampler/rna/MC_RNA_MultiSuite.hh>
#include <protocols/recces/options/RECCES_Options.hh>
#include <protocols/recces/params/RECCES_Parameters.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/pose/Pose.hh>
#include <core/pose/rna/RNA_SecStruct.hh>
#include <core/pose/rna/util.hh>
#include <basic/Tracer.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::recces

Functions
static basic::Tracer	TR ("protocols.recces.stdev_util")
void	protocols::recces::set_sampler_gaussian_stdev (protocols::recces::sampler::MC_CombOP sampler, core::Real const &temperature, core::pose::Pose const &pose, protocols::recces::options::RECCES_Options const &options, protocols::recces::params::RECCES_Parameters const &params)
	TODO: Unify into single function (see notes below on using MC_Sampler::find) More...
void	protocols::recces::set_gaussian_stdevs_recces_turner_from_secstruct (protocols::recces::sampler::MC_CombOP sampler, core::Real const &temperature, core::pose::Pose const &pose, core::pose::rna::RNA_SecStruct const &rna_secstruct)
void	protocols::recces::set_gaussian_stdevs_recces_turner_legacy (protocols::recces::sampler::MC_CombOP sampler, core::Real const &temperature, core::pose::Pose const &pose, protocols::recces::params::RECCES_Parameters const &params)
void	protocols::recces::set_gaussian_stdevs_recces_turner (protocols::recces::sampler::MC_CombOP sampler, core::Real const &temperature, core::pose::Pose const &pose, core::pose::rna::RNA_SecStruct const &rna_secstruct, protocols::recces::params::RECCES_Parameters const &params)
core::Real	protocols::recces::gaussian_stdev (core::Real const n_rsd, core::Real const temp, bool const is_bp)
void	protocols::recces::set_gaussian_stdevs_thermal_sampler (protocols::recces::sampler::MC_CombOP internal_bb_sampler, protocols::recces::sampler::MC_CombOP chi_sampler, protocols::recces::sampler::rna::MC_RNA_MultiSuiteOP standard_bb_sampler, Real const &temp, core::Size const &total_rsd, core::Size const &sampled_rsd, utility::vector1< bool > const &is_free)
void	protocols::recces::set_gaussian_stdevs_thermal_sampler (protocols::recces::sampler::MC_SamplerOP sampler, core::Real const &temperature, core::pose::Pose const &pose, protocols::recces::options::RECCES_Options const &options)

Detailed Description

encodes 'reasonable' assumptions about sampling stdevs.

Detailed: stdevs change with temperature.

Author

Rhiju Das, rhiju.nosp@m.@sta.nosp@m.nford.nosp@m..edu

Function Documentation

TR()

static basic::Tracer TR ( "protocols.recces.stdev_util"  )

static