|
Rosetta
|
This mover takes a stretch of backbone and perturbs its mainchain torsions based on the probabilities of transitions from one torsion bin to another. More...
#include <protocols/simple_moves/bin_transitions/PerturbByBins.hh>#include <protocols/simple_moves/bin_transitions/PerturbByBinsCreator.hh>#include <core/scoring/bin_transitions/BinTransitionCalculator.hh>#include <core/scoring/bin_transitions/BinTransitionCalculatorManager.hh>#include <core/types.hh>#include <core/pose/Pose.hh>#include <core/conformation/Residue.hh>#include <core/id/TorsionID.hh>#include <core/id/types.hh>#include <utility/tag/Tag.hh>#include <basic/Tracer.hh>#include <basic/citation_manager/UnpublishedModuleInfo.hh>#include <utility/vector1.hh>#include <numeric/random/random.hh>#include <utility/tag/XMLSchemaGeneration.hh>#include <protocols/moves/mover_schemas.hh>Namespaces | |
| protocols | |
| The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP. | |
| protocols::simple_moves | |
| protocols::simple_moves::bin_transitions | |
Functions | |
| static basic::Tracer | protocols::simple_moves::bin_transitions::TR ("protocols.simple_moves.bin_transitions.PerturbByBins") |
This mover takes a stretch of backbone and perturbs its mainchain torsions based on the probabilities of transitions from one torsion bin to another.
Headers for the PerturbByBins mover. This mover takes a stretch of backbone and perturbs its mainchain torsions based on the probabilities of transitions from one torsion bin to another.
Fwd declarations for the PerturbByBins mover. This mover takes a stretch of backbone and perturbs its mainchain torsions based on the probabilities of transitions from one torsion bin to another.
Bin transitions are read from database files. The algorithm is: set the first residue based on the probability of a residue being in a bin. Set subsequent residues based on the probability of a residue being in a bin given that the previous residue is in a particular bin.
1.9.1