util.cc File Reference

Utility functions for working with the multistate-design classes. More...

#include <protocols/pack_daemon/util.hh>
#include <protocols/pack_daemon/EntityCorrespondence.hh>
#include <core/chemical/ChemicalManager.fwd.hh>
#include <core/pose/annotated_sequence.hh>
#include <core/pose/Pose.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/ResfileReader.hh>
#include <protocols/genetic_algorithm/EntityRandomizer.hh>
#include <protocols/multistate_design/util.hh>
#include <utility/excn/Exceptions.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::pack_daemon

Functions
void	protocols::pack_daemon::create_entity_resfile_contents (std::istream &resfile, std::string const &resfile_name, core::pack::task::ResfileContentsOP &entity_resfile_contents, core::pack::task::PackerTaskOP &entity_task, core::Size &num_entities)
void	protocols::pack_daemon::initialize_task_from_entity_resfile_and_secondary_resfile (core::pose::Pose const &pose, EntityCorrespondenceCOP ec, core::pack::task::ResfileContents const &entity_resfile_contents, core::pack::task::ResfileContents const &secondary_resfile_contents, core::pack::task::PackerTaskOP task)
void	protocols::pack_daemon::initialize_ga_randomizer_from_entity_task (protocols::genetic_algorithm::PositionSpecificRandomizerOP rand, core::pack::task::PackerTaskOP entity_task)

Detailed Description

Utility functions for working with the multistate-design classes.

Author

Andrew Leaver-Fay (aleav.nosp@m.erfa.nosp@m.y@gma.nosp@m.il.c.nosp@m.om)