AbrelaxMover.cc File Reference

This class will be handled to a SampleProtocol as a control instance. More...

#include <protocols/abinitio/AbrelaxMover.hh>
#include <core/pose/Pose.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <protocols/abinitio/FragmentSampler.hh>
#include <protocols/abinitio/ConstraintFragmentSampler.hh>
#include <protocols/idealize/IdealizeMover.hh>
#include <protocols/jd2/util.hh>
#include <protocols/jumping/util.hh>
#include <protocols/loops/Exceptions.hh>
#include <protocols/loops/Loops.hh>
#include <protocols/loops/Loop.hh>
#include <protocols/loops/loop_mover/refine/LoopMover_KIC.hh>
#include <protocols/loops/loops_main.hh>
#include <protocols/loops/loop_closure/ccd/WidthFirstSlidingWindowLoopClosure.hh>
#include <protocols/relax/ClassicRelax.hh>
#include <protocols/relax/util.hh>
#include <protocols/topology_broker/TopologyBroker.hh>
#include <protocols/topology_broker/util.hh>
#include <protocols/viewer/viewers.hh>
#include <protocols/simple_moves/RepulsiveOnlyMover.hh>
#include <basic/options/option.hh>
#include <basic/datacache/BasicDataCache.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/options/keys/abinitio.OptionKeys.gen.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/options/keys/loops.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/run.OptionKeys.gen.hh>
#include <basic/options/keys/abrelax.OptionKeys.gen.hh>
#include <basic/Tracer.hh>
#include <basic/MemTracer.hh>
#include <basic/prof.hh>
#include <numeric/random/random.hh>
#include <protocols/moves/PyMOLMover.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::abinitio

Functions
static basic::Tracer	tr ("protocols.general_abinitio", basic::t_info)

Variables
static basic::MemTracer	mem_tr

Detailed Description

This class will be handled to a SampleProtocol as a control instance.

Author

Oliver Lange

Christopher Miles (cmile.nosp@m.s@uw.nosp@m..edu)

Oliver Lange

Christopher Miles (cmile.nosp@m.s@uw.nosp@m..edu)

responsibilities: know which chainbreaks to penalize and close know which jumps to use during sampling, which (if any) to keep after loop-closing supply a JumpMover if jumps should be moved supply a MoveMap supply a "StrictMoveMap": the protocol should not move anything that is dissallowed in strict_movemap(), it should try to move just stuff in movemap()

Function Documentation

tr()

static basic::Tracer tr ( "protocols.general_abinitio"  , basic::t_info    )

static

Referenced by protocols::abinitio::AbrelaxMover::apply().

Variable Documentation

mem_tr

basic::MemTracer mem_tr

static

Referenced by protocols::abinitio::AbrelaxMover::AbrelaxMover(), and protocols::abinitio::AbrelaxMover::apply().