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| static basic::Tracer | TR ("core.select.util") |
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| utility::vector1< Size > | core::select::get_residues_from_subset (utility::vector1< bool > const &subset, bool select=true) |
| | Get a vector1 of the indexes which are the same value as 'select' in the ResidueSubset. More...
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| std::set< core::Size > | core::select::get_residue_set_from_subset (utility::vector1< bool > const &subset, bool select=true) |
| | Get a std::set of the indexes which are the same value as 'select' in the ResidueSubset. More...
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| utility::vector1< bool > | core::select::get_subset_from_residues (utility::vector1< core::Size > const &selection, core::Size total_nres, bool invert=false) |
| | Get a vector1 of true/false (a ResidueSubset) from a list of residue numbers. More...
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| core::select::residue_selector::ResidueSelectorOP | core::select::get_residue_selector_from_subset (core::select::residue_selector::ResidueSubset subset) |
| | Convert a residue subset back into a residue selector. @detail Not only does this allow one to go from a residue subset back to a selector, but by applying a selector to a pose and using this to go back to a selector, one can turn context-dependent residue selectors into context-independent residue selectors. More...
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| utility::vector1< bool > | core::select::get_neighbor_residues (core::pose::Pose const &pose, utility::vector1< bool > const &residue_positions, core::Real neighbor_dis) |
| | Get a boolean vector of neighbor residues given some distance < 10A. More...
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| void | core::select::fill_neighbor_residues (core::pose::Pose const &pose, utility::vector1< bool > &residue_positions, core::Real neighbor_dis=10.0) |
| | Fill a boolean vector of residues with neighboring residues. More...
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| utility::vector1< bool > | core::select::trim_neighbors_by_distance (core::pose::Pose const &pose, utility::vector1< bool > const &selection, utility::vector1< bool > const &selection_and_neighbors, core::Real &dist_cutoff) |
| | filter neighbors to a certain CB distance. Takes distance from selection to neighbors to trim neighbors. More...
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| void | core::select::filter_neighbors_by_distance (core::pose::Pose const &pose, utility::vector1< bool > const &selection, utility::vector1< bool > &selection_and_neighbors, core::Real &dist_cutoff) |
| | filter neighbors to a certain CB distance. Takes distance from selection to neighbors to trim neighbors. More...
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| utility::vector1< bool > | core::select::get_tenA_neighbor_residues (core::pose::Pose const &pose, utility::vector1< bool > const &residue_positions) |
| | Get neighbor residues within 10 A CB distance cutoff using the 10 A neighbor graph in energies. Returns ONLY the neighbor residues. More...
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| void | core::select::fill_tenA_neighbor_residues (pose::Pose const &pose, utility::vector1< bool > &residue_positions) |
| | Fill neighbor residues within 10 A CB distance cutoff using the 10 A neighbor graph in energies into the boolean vector. More...
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| std::string | core::select::get_pymol_selection_for_atoms (pose::Pose const &pose, utility::vector1< id::AtomID > const &atoms, std::string const &sele_name, bool skip_virts=true) |
| | Return a pymol selection of a set of atoms. More...
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| utility::vector1< bool > | core::select::get_master_subunit_selection (pose::Pose const &pose, utility::vector1< bool > const &full_subset) |
| | This is for a 'symmetrical' selection (iE Normal selection for symmetrical poses!). Turns off all residues that are not part of the master subunit. More...
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Utilities to help in selecting residues.
- Author
- Jared Adolf-Bryfogle (jadol.nosp@m.fbr@.nosp@m.gmail.nosp@m..com)
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Mike Tyka
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Chu Wang
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Daniel J. Mandell
