util.cc File Reference

collection of useful utilities for setting up and using a GeneticAlgorithm with multistate design More...

#include <protocols/multistate_design/util.hh>
#include <protocols/genetic_algorithm/Entity.hh>
#include <protocols/multistate_design/MultiStatePacker.hh>
#include <core/chemical/ResidueType.hh>
#include <set>
#include <core/pack/task/ResidueLevelTask.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::multistate_design

Functions
protocols::genetic_algorithm::EntityElements	protocols::multistate_design::list_amino_acid_options (core::Size i, core::pack::task::ResidueLevelTask const &rtask)
protocols::genetic_algorithm::EntityElements	protocols::multistate_design::entity_elements_from_1letterstring (std::string const &input)
	Creates a set of PosType entity-elements from a string of 1-letter AA codes. More...

Detailed Description

collection of useful utilities for setting up and using a GeneticAlgorithm with multistate design

Author

Justin Ashworth wrote this, but Andrew Leaver-Fay copy-and-pasted it into this file.